About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_023761-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_023763-T1UNCHARACTERIZED
OS493_023764-T1PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN
OS493_023765-T1EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN
OS493_023766-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_023767-T1SAP30
OS493_023769-T1PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
OS493_023770-T1-
OS493_023771-T1FI04643P-RELATED
OS493_023772-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_023773-T1AGAP012002-PA
OS493_023774-T1FIBROBLAST GROWTH FACTOR
OS493_023775-T1NEDD4-BINDING PROTEIN 2
OS493_023776-T1PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
OS493_023777-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_023778-T1PLAT DOMAIN-CONTAINING PROTEIN
OS493_023779-T1PROTEIN CBG12474
OS493_023780-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_023781-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_023782-T1GLUCOSAMINE-6-PHOSPHATE ISOMERASE
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