About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_023516-T1GTPASE, IMAP FAMILY MEMBER-RELATED
OS493_023517-T1GTPASE, IMAP FAMILY MEMBER-RELATED
OS493_023518-T1GTPASE, IMAP FAMILY MEMBER-RELATED
OS493_023519-T1PCD6 INTERACTING PROTEIN-RELATED
OS493_023520-T1-
OS493_023521-T1ARGININE OR CREATINE KINASE
OS493_023522-T1STEROL O-ACYLTRANSFERASE
OS493_023523-T1-
OS493_023524-T1LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1
OS493_023525-T1VACUOLAR PROTON ATPASES
OS493_023526-T12-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE
OS493_023527-T1INTEGRIN BETA SUBUNIT
OS493_023528-T1-
OS493_023529-T1PYRIDOXINE-5-PHOSPHATE OXIDASE
OS493_023530-T1PYRIDOXINE-5-PHOSPHATE OXIDASE
OS493_023532-T1RUN AND SH3 DOMAIN CONTAINING
OS493_023533-T1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
OS493_023534-T1-
OS493_023535-T1FORKHEAD BOX PROTEIN
OS493_023536-T1FORKHEAD BOX PROTEIN
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