About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022682-T1UNCHARACTERIZED
OS493_022683-T1PROBABLE MEMBRANE PROTEIN DUF221-RELATED
OS493_022684-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 13
OS493_022685-T1PINSTRIPE, ISOFORM A
OS493_022686-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_022689-T1AROMATIC AMINO ACID HYDROXYLASE
OS493_022690-T1AROMATIC AMINO ACID HYDROXYLASE
OS493_022691-T1DIACYLGLYCEROL KINASE
OS493_022692-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_022693-T1-
OS493_022695-T1LEUCOKININ RECEPTOR-RELATED
OS493_022696-T1LEUCOKININ RECEPTOR-RELATED
OS493_022697-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_022698-T1UNCHARACTERIZED
OS493_022699-T1C5ORF31
OS493_022700-T1CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A
OS493_022701-T1CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A
OS493_022702-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_022703-T1OPSIN
OS493_022704-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
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