Gene detail

Detailed information of scaffold537001_cov96_0.1 in Dracogyra subfusca Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
scaffold537001_cov96_0.1	RIBONUCLEASE J	scaffold537001_cov96	9921	12023	+

Gene Structure

More details in Jbrowse Sequence

CDS

scaffold537001_cov96_0.1

ATGAACGAAAACCAAGAGAACAGTAGACCAAAAAGAAACCCAAACCCATATAGACAAAATAATCAAGGGTCGCAGGAGAACAGAGTAAGCAGAGAAAACAATAATAGACCTACAAGCGAAGGCTCAAGTGAGAGCAGCAACAGGAGCAATCAAAACAGACAGTCAAACAGGAGACCTCAGTCAGATAGAAAACCAAATCCGGATAGGAAACCAAATCCAAACAATAATCAGAACCGCAAGCCTAATCCAAACAAAAAACCAAATCCTAACTATAAAAGTGGCACTCAAAAACCAAATAATAAATCTGGAAATAATAAAAATAGAGGCAAAAGAAAACAGCAGCCAACAAATGTTTCAGCGGATATGAAAACATGTCTTCTTGAAAATGACAAGATACAGCAAGCCAGAATGAATCCATGGAAACAACTAGAGATGAACTCTGGTGGTAAAATCCGCTTTACACCTCTAGGTGGTCTTGGTGAAATAGGTGGAAACATAGCTGTCATGGAGAGTGAGAACTCTGCATTTATCATAGATGTCGGCATGAGCTTTCCAGATGAAACCATGCACGGCGTAGATATACTAGTGCCAGATTTTAGTTATCTGCATGCCATAAAAGATAAAATAAAAGCCATCATTATTACTCACTCACATGAGGATCATATTGGTGCCATGCCATATCTATTTAAAGAGCTAAAATTCCCAATTTATGGTACTCCTCTAGCTTTAGCCATGATAGAGAATAAATTTAACGAACATGGACTATCTGCTGATACAAAATATTTTAACTTTGTAGAAAAAAGGAAACAGTATGATATAGGAGATTTCAAGATAGAGTGGATGCATGTCACACACTCTATCGTAGACTCCTCTTCATTGGCCATCGAATCACCAGTGGGAACCATCATACATACCGCAGACTTCAAAATAGATCATACTCCTATAGATGGATATACAACCGACCTGCACAGATTTGCGCACTATGGAAGCAAAGGTGTTCTGTGTCTATTTTCTGACTCCACGAACTCTCACAACCCAGGATTCACCAAAAGTGAAAAGGTTGTAGGGAAAACATTTGATTCTCTATTTGAAATGGCAAAGGGGAGGGTGATTATGTCAACCTTCTCTTCCAATGTCCACAGAATCGTACAGGCTATGGATAGAGGAGTTGCTCATGGCAGAAAAATATGTGTCATCGGCAGATCTATGGAGAGAAATATTGAAACCACTAGGGCGCTAGGCTATATAGATATCGATGACAAACACTTTATTGAGGCACATGAACTAGGTCGCTATAAGGATGAAGAGATACTAGTAGTAACCACTGGCTCTCAAGGTGAAGCAATGGCTGCACTTTCTCGTATGGCAACAGATGAGCATAGACACATCAAGCTAAAGCCAACTGACACTGTTATCATATCTGCATCTGCCATTCCAGGTAATGAAAGTTCAGTCTCTAAACTTATGAACCTTCTAATGAAGGCTGGTGTAACTGTTAGATATAAAGAGTTCAGCGACATTCATGTCTCTGGGCATGCAGCTCAGGAGGAGCAGAAGCTGATTTTGCGTCTAGTTCAGCCTAAATTCTTCTTGCCGGTTCATGGCGAATACAACCACCTCGTAGCACATGCCAAAACAGGTGTAGAATGTGGCGTAGACAAGAGGAACATGCTCCTGATGAGTGATGGTGACCAAGTAGAGATTACCCCTAAGTTTATCAAGAAGGTAAAAACTGTTAAAACAGGAAAAACCTACATAGACAATATGCACAATAAAGAGATCTCGAATGATGTTGTAACCGATAGGCAAAAGTTGGCAACAGATGGCATCATAAATGTTAGCCTACAGGTCTCTAGCAGTACTGGCAAGCCCATGGGCAAGATCGCCATATCAACATTTGGTATCATCGCAGACAAAGATGACAAGAAATTTGAAAAAGAGATAGAGCATATCATAGAGACCTATCTACTTACAGCCAAAAATGATGGCTCCATCAATGCAAAAAAGCTGGAAGAGGATATCAGGGGACTTGTACGAAAGCATGTTGTGCGTCTAAAAAAGCTCTACCCAGCAATCACCGTCAATATCTTTTTAGCAAGCTAG

Transcript

scaffold537001_cov96_0.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00753	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan
PF07521	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF17770	RNase_J_C	Ribonuclease J C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001279	Domain	Metallo-beta-lactamase	Interproscan
IPR004613	Family	Ribonuclease J	Interproscan
IPR011108	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR030854	Family	Ribonuclease J, bacteria	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR041636	Domain	Ribonuclease J, C-terminal	Interproscan
IPR042173	Homologous_superfamily	Ribonuclease J, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43694	RIBONUCLEASE J	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-