| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| scaffold405972_cov164_0.0 | SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F | scaffold405972_cov164 | 12116 | 12913 | - |
| CDS | |||||
| scaffold405972_cov164_0.0 | |||||
| Transcript |
| scaffold405972_cov164_0.0 |
| Protein |
| scaffold405972_cov164_0.0 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01423 | LSM | LSM domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001163 | Domain | Sm domain, eukaryotic/archaea-type | Interproscan |
| IPR010920 | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR016487 | Family | Sm-like protein Lsm6/SmF | Interproscan |
| IPR034100 | Family | Small nuclear ribonucleoprotein F | Interproscan |
| IPR047575 | Domain | Sm domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11021 | SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000387 | Biological Process | spliceosomal snRNP assembly | Interproscan |
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005681 | Cellular Component | spliceosomal complex | Interproscan |
| GO:0005685 | Cellular Component | U1 snRNP | Interproscan |
| GO:0034715 | Cellular Component | pICln-Sm protein complex | Interproscan |
| GO:0071013 | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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