| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| scaffold194820_cov132_0.0 | PRE-MRNA SPLICING FACTOR PRP8 | scaffold194820_cov132 | 1547 | 20023 | - |
| CDS | |||||
| scaffold194820_cov132_0.0 | |||||
| Transcript |
| scaffold194820_cov132_0.0 |
| Protein |
| scaffold194820_cov132_0.0 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08083 | PROCN | PROCN (NUC071) domain | Domain | Interproscan |
| PF10596 | U6-snRNA_bdg | U6-snRNA interacting domain of PrP8 | Domain | Interproscan |
| PF10597 | U5_2-snRNA_bdg | U5-snRNA binding site 2 of PrP8 | Domain | Interproscan |
| PF10598 | RRM_4 | RNA recognition motif of the spliceosomal PrP8 | Domain | Interproscan |
| PF12134 | PRP8_domainIV | PRP8 domain IV core | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR012592 | Domain | PROCN domain | Interproscan |
| IPR019580 | Domain | Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding | Interproscan |
| IPR019581 | Domain | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding | Interproscan |
| IPR019582 | Domain | RNA recognition motif, spliceosomal PrP8 | Interproscan |
| IPR021983 | Domain | PRP8 domain IV core | Interproscan |
| IPR027652 | Family | Pre-mRNA-processing-splicing factor 8 | Interproscan |
| IPR042516 | Homologous_superfamily | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily | Interproscan |
| IPR043172 | Homologous_superfamily | Prp8 RNase domain IV, palm region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11140 | PRE-MRNA SPLICING FACTOR PRP8 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000244 | Biological Process | spliceosomal tri-snRNP complex assembly | Interproscan |
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005681 | Cellular Component | spliceosomal complex | Interproscan |
| GO:0005682 | Cellular Component | U5 snRNP | Interproscan |
| GO:0017070 | Molecular Function | U6 snRNA binding | Interproscan |
| GO:0030619 | Molecular Function | U1 snRNA binding | Interproscan |
| GO:0030620 | Molecular Function | U2 snRNA binding | Interproscan |
| GO:0030623 | Molecular Function | U5 snRNA binding | Interproscan |
| GO:0071013 | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| GO:0097157 | Molecular Function | pre-mRNA intronic binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
