Detailed information of scaffold135520_cov72_0.0 in Dracogyra subfusca Gene info
Gene IDAnnotationScaffoldStartEndStrand
scaffold135520_cov72_0.0RNA POLYMERASE SIGMA FACTOR RPOscaffold135520_cov7232464760+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00140Sigma70_r1_2Sigma-70 factor, region 1.2FamilyInterproscan
PF04539Sigma70_r3Sigma-70 region 3FamilyInterproscan
PF04542Sigma70_r2Sigma-70 region 2 DomainInterproscan
PF04545Sigma70_r4Sigma-70, region 4DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000943DomainRNA polymerase sigma-70Interproscan
IPR007624DomainRNA polymerase sigma-70 region 3Interproscan
IPR007627DomainRNA polymerase sigma-70 region 2Interproscan
IPR007630DomainRNA polymerase sigma-70 region 4Interproscan
IPR009042DomainRNA polymerase sigma-70 region 1.2Interproscan
IPR012760DomainRNA polymerase sigma factor RpoD, C-terminalInterproscan
IPR013324Homologous_superfamilyRNA polymerase sigma factor, region 3/4-likeInterproscan
IPR013325Homologous_superfamilyRNA polymerase sigma factor, region 2Interproscan
IPR014284DomainRNA polymerase sigma-70 like domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR050239FamilySigma-70 factor family, RNA polymerase initiation factorsInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR30603RNA POLYMERASE SIGMA FACTOR RPOInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016987Molecular Functionsigma factor activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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