Gene detail

Detailed information of scaffold1176301_cov503_0.0 in Dracogyra subfusca Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
scaffold1176301_cov503_0.0	UVRABC SYSTEM PROTEIN B	scaffold1176301_cov503	2706	4712	+

Gene Structure

More details in Jbrowse Sequence

CDS

scaffold1176301_cov503_0.0

ATGGAATTTCAACTAAAAAGTAGTTATCAACCCGCAGGAGATCAACCAAAAGCTATCCAAGCGTTGATTGATGGAATTCACAGAAATGTTCCGCAAACCCTACACGGCATCACTGGTTCAGGGAAAACATTTACCATTGCTAATGTGATTCAAGCCCTTCAAAGACCGGTGCTATTATTGAGCCACAACAAAACATTGGCCGCCCAGCTTTTTAGTGAACTAAAAGAGTTTTTCCCCGAAAATGCTGTTGAGTTTTTTATTAGTTATTACGATTACTATCTACCAGAATCCTATCTACCGCAGACCGACACTTATATCGCAAAAGATTCAGCCGTTAATGATGAAATTGAAAAACATCGACTTTCTGCTACTTCCGCTCTATTAAGTCGAAAAGATGTGATTATCGTCGCTTCGGTCTCCTGTATTTATGGTTTAGGGGCGCCAGAAGCCTATGCGGCGATGACCATTGACTTAAAACTGGGCGAAACCATTGACCGAGATGCGTTTATAGAAAAATTGGTCGATATCCAATACGAGCGGAATGATACCACTCTGAGTCGCGGCGGTTTTTCGGTGTTAGGCGATACGATCGAGGTTTACCCAGCTTACAAAGATGAATGTTATCGCGTCGAGTTTTGGGATGATGAAGTCGAGCGTTTAACTCGTCGAGACCCTTTAACAAAGAATAGTCGAGAAGTTTTAGAAGAGATGACCATTTTTCCTGCCAAGCATTTTGTGATGTCTAATGTTCAAATCGAAGAAGCGATCCCCAATATAATGAAAGAGATGGAAGAGCAAGTTGAGTTTTTTGAAAAAAGTGGTCGCTTAGTTGAGGCCCAACGCATTTATCAACGCACCAATTACGATATGGAAATGCTTCGGGAAATGGGTTATTGTTCGGGCGTGGAAAATTACTCCATGCACCTGACTGCTGGTCGAGAAATGGGGTCCATCCCGAATACGCTTCTGGATTTTTTCCCTGATAATCTATTAGTAATTGTCGATGAATCCCATGTAAGTCTGCCTCAAGTTCGTGGCATGTTTAATGCCGATCGAAGCCGTAAACAATGTTTAGTTGATTACGGATTTCGGCTACCATCTGCTTTAGATAACCGACCATTAAACTTCAGTGAGTTTGAGAATAAGATAAATGATATTATTTATATATCAGCCACACCCGCTCCTTACGAGATGGAAAATTCAGAAAAGGTGACCCAAGAAATCCGACCAACTGGACTTTTAGACCCCGCCATCGAAGTCCGACCTTTAAAAAACCAAATAGATGATTTAATTGAAGAAATCCGACTTGCTGCTGAAAAAGACGAACGCATCTTAGTTACCACTCTAACCAAACGCACTTCCGAGGATTTGAGCGATTACCTGCATGAAATCGGCATTAAAACCAAGTACCTTCACTCAGAAATCGATTCCATTGAACGCGTAGAAATATTACGGGGATTAAGAGCTGGAGAGTTTGACTGTTTAATTGGAGTCAATTTATTGAGAGAGGGCCTAGACCTACCAGAGGTCGCCTTAGTCGCTATATTAGATGCGGACAAAGAGGGGTTTTTAAGATCTGAAACCGCTCTTTTCCAGACCGTTGGTCGAGCGGCAAGAAATCTCAATGGACGAGTTATTTTCTATGCCAACAAGATTACCAAAGCGATGCGTGTTGTGCTTGATAAAACAGCAGAACGACGAGAAAAGCAACATCAGTTTAATCTTGAAAATAACATCAAACCCCAAAAAACATTGCATACTTACCAAGCTAGTGAAAAAGTTCTGTATGCCATGGTTGCCGATGGCGATGAAGCGTATGATTTATCCAGACATGTCCGGCAGTTAGAAGCTGAAATGGAAGAGGCCGCCCTAGCCATGGAGTTTGAGCGTGCTGCCATGTTACGAGATCAAATTTTTGAATTACAAGGCAAGAGTACGAGTCAATTCCACAAACAGACCAAGAAGAAAAAGAAAGTGAAATATTAA

Transcript

scaffold1176301_cov503_0.0

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02151	UVR	UvrB/uvrC motif	Family	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF12344	UvrB	Ultra-violet resistance protein B	Family	Interproscan
PF17757	UvrB_inter	UvrB interaction domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001943	Domain	UVR domain	Interproscan
IPR004807	Family	UvrABC system, subunit B	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR024759	Domain	UvrB, YAD/RRR-motif-containing domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036876	Homologous_superfamily	UVR domain superfamily	Interproscan
IPR041471	Domain	UvrB, interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24029	UVRABC SYSTEM PROTEIN B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0009380	Cellular Component	excinuclease repair complex	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-