Detailed information of scaffold1084441_cov503_0.0 in Dracogyra subfusca Gene info
Gene IDAnnotationScaffoldStartEndStrand
scaffold1084441_cov503_0.0RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMOscaffold1084441_cov5031909-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00919UPF0004Uncharacterized protein family UPF0004FamilyInterproscan
PF04055Radical_SAMRadical SAM superfamilyDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR005839FamilyMethylthiotransferaseInterproscan
IPR005840FamilyRibosomal protein uS12 methylthiotransferase RimOInterproscan
IPR006638DomainElp3/MiaA/NifB-like, radical SAM core domainInterproscan
IPR007197DomainRadical SAMInterproscan
IPR013848DomainMethylthiotransferase, N-terminalInterproscan
IPR020612Conserved_siteMethylthiotransferase, conserved siteInterproscan
IPR023404Homologous_superfamilyRadical SAM, alpha/beta horseshoeInterproscan
IPR038135Homologous_superfamilyMethylthiotransferase, N-terminal domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR43837RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMOInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:0016740Molecular Functiontransferase activityInterproscan
GO:0018339Biological Processpeptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acidInterproscan
GO:0035596Molecular Functionmethylthiotransferase activityInterproscan
GO:0035599Molecular Functionaspartic acid methylthiotransferase activityInterproscan
GO:0051536Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0051539Molecular Function4 iron, 4 sulfur cluster bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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