Gene detail

Detailed information of scaffold1084249_cov479_0.0 in Dracogyra subfusca Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
scaffold1084249_cov479_0.0	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	scaffold1084249_cov479	1101	3167	+

Gene Structure

More details in Jbrowse Sequence

CDS

scaffold1084249_cov479_0.0

ATGCCCAAAGTTAAAATTCTTTCCGAACAAATCACCAACTTGATTGCCGCTGGAGAAGTGGTAGAACGCCCAGCTTCTATTGTTAAAGAGTTAATCGAAAATTCTTTAGATGCGGGCGCGACTCGAATTCGGGTGAATATTCAGAGTGGGGGACGGAAACTCGTTCAGGTCACAGATAATGGTTGTGGTATGGATCAAGCGGATGCAGAAATGTGTCTAAAACCACATGCAACGAGTAAAATTAGTTGTGAAGAGGATGTCGAACGGATCAAAACCATGGGCTTTCGTGGCGAAGCGATTCCTAGTATTGCAGCGGTGACTCATTTTAGTTTGCTTACGCGACTACATAGTGCAAAAGTTGGAACTGAGGTTATTGTGAAGGGTGGAAGGGTTGAGCGGGTGAGTGAAGCCGGGTCCGCTCCAGGAACAACGGTGACGGCTAAGAATCTCTTTTTTAATATGCCCGTTCGTAAAAAGTTTCTTCGAACTCAGCAAACAGAATCTATTCACATTCAGACGGTGGTTCAACAACAAGCCCTTGCTAACCCAAATGTTGCTTTTGAATTGATTATGGATGGCAAGCAGGTGTTCAAAGTGGCGGTGAGTGATGTGACGACCCGAGTCTCGATGTTGCTTGGAAAAAGCTTTATGCAAGAGATGATTTTTACCGATTATGAAGAGTCTGAGATCAGAGTTCAGGGGTTCATGGCCAAGCCGGGTATTAGTCGCAGTACAAGAAAAGAACAACAGTTTTTTATCAATGGTCGTCCAGTTGTGGCAGATACACTCTATTATGCGGTTCGCGATGGCTATTTTACACTTGTTCAGAAGGGGCGTTACTCTCCCGTTATTTTATTTCTAGAGATGCATGCGGGGTTAGTTGATGTCAATGTTCATCCTCAAAAGCGAGAAGTTAGGTTTCGTAAAAATTCATTGATTTCAGCCGTGGTGGTGAATGCGATTAAAGACGGGATTCAAAAATTTCAATTGTCTCAATATGAGAAACGGTCGGACCATTTTCTGACTGCTCCACATGGAGAAACCCCGGTGATCCGCCCTGGATTTAGTAAACTTACGCGGGAAGATATTGGTCTTAGATCATCTGAAAACCAGTCCCCAGTTATTGCCCCATCGGTCGAGCAGGGTTCAAGCAATACCCCGTTGAATTTAGCAACCCGCCCTGATCCTAGTGTAGATCCAGACAACGAAACGAACGAGTTGAGCTCTATAGATCCTAATTTAGCAGAGGTTATCCTTGCTGCGGAATCGATTCTGAACCCAACAGATTTACCGAATACGCCAAGCCAGAAGATGGGTGATGTTGCCTTAAAGTTGTCCCCTAAAACACCATTGGAAGCGGTTTCGCCAGACTTTGGAATTTCATCTGATCTGAATCCGAATCAAGAGTCCTATGATCTACCAGAGGCGGTTGCTCCTAATTTTACGGCACAAGCGGAACTGTTTGAAAATCAAAAACAGATTAATCTCTTTGCGGATCTAAAGGTGATTGGCCCCTTTGGTAAAAGCTACATTTTAGCCGAGGGCGCAGATGGCTTGGTTATGATTGACCACAATGCAGCTCATCGTCGAATAATTTATGAACAAATTTTAGCACATGCCAAAAACGAAGATAACTATAGTCAACCGCTCTTGTTACCAATCACTCTAGAATTAACGAGTCACGACCGATTGATAATGGCCCAGAATGAAAAATATTTTAATCAGGTTGGTTTCACCATAGAGGCATTTGGTGGTAATACCTATATGGTTTCTGCCATACCTGCGCATCTTCCTCAGGAAAATATTGTGGGACTTCTGCAGCAGATATTAGATGATTTAAGTCAAAGTAGTCCAGGTAAGATGCCCAAAGTTAGTGCGGTTAATTTAGCCAAGATTACATCTAAGTTTGCGACCCCTTTTGGGTATGAACTTAAGGCATTGGAAGTGCGTAAGTTATTAGATGATTTAGCAAAGACAGAGATGCCCTACACTTGTCCTGATGGTCAAGCCACCATGGTGAATTACTCTTTTTCTGATATCCGTCGTCGATTTGGGAATAAGCGGTAA

Transcript

scaffold1084249_cov479_0.0

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01119	DNA_mis_repair	DNA mismatch repair protein, C-terminal domain	Family	Interproscan
PF08676	MutL_C	MutL C terminal dimerisation domain	Domain	Interproscan
PF13589	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002099	Family	DNA mismatch repair protein MutL/Mlh/PMS	Interproscan
IPR013507	Domain	DNA mismatch repair protein, S5 domain 2-like	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR014790	Domain	MutL, C-terminal, dimerisation	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR020667	Family	DNA mismatch repair protein, MutL	Interproscan
IPR036890	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR037198	Homologous_superfamily	MutL, C-terminal domain superfamily	Interproscan
IPR038973	Family	DNA mismatch repair protein MutL/Mlh/Pms-like	Interproscan
IPR042120	Homologous_superfamily	MutL, C-terminal domain, dimerisation subdomain	Interproscan
IPR042121	Homologous_superfamily	MutL, C-terminal domain, regulatory subdomain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0032300	Cellular Component	mismatch repair complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-