Gene detail

Detailed information of scaffold1062514_cov75_0.0 in Dracogyra subfusca Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
scaffold1062514_cov75_0.0	DNA POLYMERASE III SUBUNIT ALPHA	scaffold1062514_cov75	168	3416	-

Gene Structure

More details in Jbrowse Sequence

CDS

scaffold1062514_cov75_0.0

ATGCGGCTTAGTTCTGAAGCTTATATCAAGGGCTTCTACTACTATCCACGCATCAACTGGGATCTGCTCAAAGAGCATAGCGAAGGGCTTATCTGCTCATCTGCTTGCTTGCAGGGTGAGATCAGCTGGAACCTCAATCTCTCAGGCTATGATGAAGCAAAAGCAGTTGTCTTGAGATACAAAGAGCTGTTTGGTGATGACTTTTATGTAGAGATCATGCGTCATGGCATAGGTGACCAGCATAAGATAGACACACAGATACTGCAGATAGCCAAAGAGACTGGCATCAAACTGGTAGCCACCAATGATACGCACTACACACTACAGAAAGATGCAGATGCACATGAGGCGTTTATGTGTATTGCGATGAATAAACTCTATGATGACCCCAATCGTCTGCGTCACTCTGTGCATGAGTTCTATGTCAAATCGCCTGAGCAGATGGAGATGCTCTTTGCCGACATACCAGAAGCACTGCATCATACACAAGAGATAGCAGACAAGTGCAATCTAGAGATAAAGCTAGGCAATCCTACACCACCAAACTTTAAGTTTGCTAGAGAAAGAGCAGAAAATGACAAGATACTGTTTATTGAGGAGTCCAAAAGAGGGCTTAAAAAAAGGCTCAAGATAGTGCCTTCTGAAAAACACGAAGAGTACAGAGAGAGATTGCAGGTAGAGATAGACATCATCAATAACATGAAATTTCCAGGTTATATGCTGATAGTATGGGACTTTGTCAAGGCTGCCAAGGATATGGGCATACCAGTAGGTCCAGGTAGGGGTTCGGCGGCTGGATCGCTGGTGGCATATTCATTGGCGATTACGGATATAGATCCTATGCCCTATGGTTTACTATTTGAGAGATTTCTTAACCCTGAAAGAATATCTATGCCTGATATTGATATGGATTTCTGTCAGGCAAGGCGACAAGATATATTGGATTATGTGGTAGATAAGTATGGACGAGTGAATGTAGCACAGATAATCACCTTTGGTAAACTGCTTGCCAAGGGAGTGATCCGTGATGTAGCTAGAGTACTTGACATGCCATACTCAAGAGCAGATGCGATGGCAAAACTGATTCCAGACGAGCTGGGCATTGACCTAAAAAATTCATACGAAAAAGAGCCCAAGATCAAAGAGCTTCTAGAGAGCGATCCTCAGGCAAAACGCGTCTGGGAGTATGCACTTGCTCTAGAGGGGTTAAATAGAAATGCAGGAACACACGCAGCGGGAGTGGTGATATCTAATGAGCCACTTTGGGAAAAAACACCACTGTTCAAGCCATCTGGGCTGGATACACTGGCAACTCAATATAGTGGAAAGTATGTCGAAGATGTGGATCTGATAAAGTTTGACTTTTTGGGACTCAAAACTCTAACAGTCATAGATGAGGCACTCAAGCTTGTCAAGAAGAGGCACAATAGAGATATAAACTTTGTAGAGGAGAATATAGAAGATCCTGAAGTATACAAGTATATAGGTACAGGAGATACGCTGGGACTTTTCCAAATAGAGTCGCCTGGAATGCAGGATCTTGCCAAGAAGCTAAAGCCAGACGGCTTTGAAGATGTTATTGCGATGTTGGCACTCTATCGTCCTGGTCCTATGGAGTCAGGGATGCTTGATGATTTTGTCGAGCGAAAACATGGAAGGGCAGAGATTACTTATATGTTTCCAGAGCTAGAAGAGATACTAAAGCCTACCTATGGGGTGATAGTCTATCAAGAGCAGGTCATGCAGATAGTGCAGACAATCGGTGGCTTTAGCCTAGGTGGTGCGGATCTAGTTCGTCGTGGTATGGGAAAAAAGGATCAGGCACTGCTGGATAAGCTTAAGACGGAGTTTGTGGAGGGTGCTGTAAAAAATGGATATGATCAGCATAAATCTGGAGAATTATTTGATCTGATCTTGAAGTTTGCAGGGTATGGATTTAACAAATCACACTCTGCTGCATATGCCATGATCACATTTTACACATCCTATCTCAAGCACTACTATCCTACAGAGTTTATGGCAGCCATTCTGACTTTGGAAAAAAACAATACCGACAAAGTAGTCAAGTATGTAGATGAGTTAGGGCATATGGGCATTAAACTGCTTCCACCTGATATCAATAGGTCTGGGCTTGTTTTTGAAGCCACGAATATAGATGGTGAAGAGGTTGTTATGTTTGGTATGGGTGCTGTCAAAGGTGCTGGAGATATCGCTATCAGTTCGATGCTTGCTGTGAGAGAGGAGGGAGAGTTCAGAGATCTTAGTGACTTTGTATCACGCATTGACTCATCCAAGGTAAACAAAAAAGTTATAGAGTCTCTTGTAAAAGCCGGTGCGTTTGATGGCTTTGGGTACACGAGAAAATCATTAATAGCTCAGATAGAAGAGATAATAGACGCAGCAAAAAGAGCAGGCGATGCGAAGAAAAATGCTGTAGGTTCACTCTTTGGTGGGGGCGAAGAGATGACATCTGTTGTGCTAGATCTGAACCATCTGGATGAGTTTGAACCTCTGGAGATACTAGAGATGGAGAAGGAGTCGCTAGGCTTTTATGTTTCAGGGCATCCTTTGGATAAATATAGAGAGCAACTAAGCGGCATAGACTATACTCTCAGCTCAGAGATAAGCGAACTGGCAGATGGCTCACAAGCCCTCTTTATCGGAAAAATAGAGTCCATAACAGAGAGGATTAGTAAAAAGGGAAATAAGTTTGGCGTAGCAAATATAATGGATCTGCATGGCAGTATAGAGCTTATGCTATTTGAAAATCGCCTCAAAGAGTTGAAGGAGGATTTTGATATTACTAAGCCAATAGCCTTTAAGGTCAAGATAGGCAAAGATGGTGACTTTACTCGTATGAACATTCTCAAAATTGAGTCACTCAAGGATGCAAAAAAAGAGAAAGTAAAAGTCAAAAAAGAGCAGAAGCATATACCTGAACCAGAACAGCCACCATTGATATTGGCACTTAATTTGACTACTGATCCAAGTATTGCAGAGGAGTTATTATCTCTAGTAGAAAAGTATCCAGGGAAAAGGCCTTTAGAGCTGCATATCAAAAGCAAGTTGGCGGATGTTATCATAGAGAGCAGGGCAAAAGTGAGTGAACTGATACTAGAAGAGGCAAAAGAGCTTGGAATATATCCAGAAGAGAGACTTGTTGTAGAGGCATAG

Transcript

scaffold1062514_cov75_0.0

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02811	PHP	PHP domain	Family	Interproscan
PF07733	DNA_pol3_alpha	Bacterial DNA polymerase III alpha NTPase domain	Domain	Interproscan
PF14579	HHH_6	Helix-hairpin-helix motif	Domain	Interproscan
PF17657	DNA_pol3_finger	Bacterial DNA polymerase III alpha subunit finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004013	Domain	PHP domain	Interproscan
IPR004805	Family	Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC	Interproscan
IPR011708	Domain	Bacterial DNA polymerase III, alpha subunit, NTPase domain	Interproscan
IPR016195	Homologous_superfamily	Polymerase/histidinol phosphatase-like	Interproscan
IPR029460	Domain	DNA polymerase, helix-hairpin-helix motif	Interproscan
IPR040982	Domain	DNA polymerase III alpha subunit finger domain	Interproscan
IPR041931	Homologous_superfamily	Bacterial DNA polymerase III alpha subunit, thumb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32294	DNA POLYMERASE III SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-