Gene detail

Detailed information of pred2_50996.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_50996.1	AAA DOMAIN-CONTAINING	Sc3x4tf_149	2444342	2282022	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_50996.1

ATGCAACGTCGCGGCAGTGGAAGGATTTTCGGGCGCAAGAGACATGACAGTCAGTCACGAAACCCACCAAAAAACGAACGGAGTTTCCACAGACAGAACGTACGGGTATGTGCTACCCCTTTGCTGATCTTATTCGCCGTAATTAGGGCGATTGCAGCCCAATTATGGCTAGTCCTTGTCATACTGGTTTGCAAGAGTCGCAAATCCATAGCATTTCACAGGTGCTCGGAAAAGATGTCTAACCGAAAGAAAAAGTGTCCCGACGAAGAAAAAGCCTTCATGGTGTCCAATTTAGGTGAATCGGGGAAGATAAGGACCACGACCATCGGTCCAGGGGAGCCGTCACTCTCTAAACAGAAACATCATCATAGGAAAGCTTTTGAATACATATCAAAAGCGTTGAAAATTGACGAAGAGGATGCAGGCCGAAAAGAATTAGCTATAGAATATTACAAAAAAGGTATCGGCGAACTGGACAAAGGGATAGCTGTGGACGTCAATGGTCAAGGGGAAGCATGGGAACGAGCCAGGCGATTGCGGGACAAGATGACCACCAATCTTGCTATGGCAAAAGATCGTCTCGAAGTTCTCGAAAAAATGATGCAAAAACCCACCACAGACAATGGTGGCGACCCCTCAGCATGTGACACAAACAGGTCGAGACCGGGCACTCCCCAACTGAAGAGAAAGTTTGATTTCAGCCCTGCCTCCTCCCCTACACACCATCCAAAGTTAGCCTTACCTCCATCTTCTTCATCTCCATCATCTCCTCATCCAGGTGACGCCTTTATCAGCCTGGACTGCCAGTATCGGTGCTGCTTGCAGATAGGACTGGTTGCCACTGTCGCATCCACAGCTGCCATCATCATTGAATTTGAAGTGCATGTTTTTGGTGAGTCATCGTGTAAAGTCAGGAAAATCAATCAACGAAGCCATTATCCCTCTCGGGGGTGGGGGCTGGGGGAAGAAGCAGTTGCCTCGAAACCTTTGAAGCCATCCAAAAACCAGTTACTGGTGCACAAGAGCAACACCCTACCTCGCACAAGGAGTACATCCTCCTCCAGACAAGACAGCCCAACATCTTCACCCAAGAGACAACACCACAGGCGACAACTATCTCAGCCAGATATCAAGAGTTCGCCAAAGAAAGAAAAACAACTGCCCGCCAGCTTCAAAAATGTCGACAAAAAGTTGGCAAATTTAATTTTGAATGAAATTGTCGACTTTGGTCCCCCAGTTGCGTTCAGTGATGTTGCTGGACAACAGACTGCTAAACAGGCCTTACAAGAAATTGTCATCCTGCCTTCTCTTCGACCTGAGCTCTTCACTGGACTTCGAGCCCCAGCACGTGGCCTCTTGCTATTTGGCCCACCAGGGAATGGAAAAACCATGCTGGCCAAAGCCGTTGCCAATGAGTCCAACGCAACATTCTTCAACATAAGCGCTGCCAGTTTAACTTCAAAATACGTTGGAGAAGGTGAAAAATTGGTTCGTGCACTTTTTGCAGTCGCAAGAGAACTGCAACCTGCTGTCATCTTTATTGATGAAATTGACTCTCTATTATGTGAGAGAAGAGAAGGTGAAAATGAAGCGAGCCGCCGCTTGAAAACTGAATTTCTCATTGAATTTGATGGACTCAGCGGTAGTTCAGATGACAGAATTTTAATTATGGGAGCAACAAATCGACCCCACGAATTGGACGATGCTGTGCTGCGACGGTTTGCAAAACGAGTCTACGTAACAATGCCTGAAAATCATACACGGAGGTCGATGCTGGTACATTTATTGGCAAAGCATGGTAACCCTTTGACAAGTAAAGAAATGGAGGGCCTCGCCAGACTGACCGAAGGATATTCGGGGAGCGATCTGACAGCTTTGGCCAAAGATGCGGCCTTAGGACCAATACGCGAGCTCTCTCCTGCTGAGGTAAAATGCCTGGACGCGAGCAAGGTCCGTTGCATACAAATGATTGACTTTTTAGAATCCCTGAAGAAAATCCGCAGGAGCGTCCCAATTGACAGTCTTGATAAATACGAAAAATGGAATCAAGAGTATGGCGATATAACAACA

Transcript

pred2_50996.1

ATGCAACGTCGCGGCAGTGGAAGGATTTTCGGGCGCAAGAGACATGACAGTCAGTCACGAAACCCACCAAAAAACGAACGGAGTTTCCACAGACAGAACGTACGGGTATGTGCTACCCCTTTGCTGATCTTATTCGCCGTAATTAGGGCGATTGCAGCCCAATTATGGCTAGTCCTTGTCATACTGGTTTGCAAGAGTCGCAAATCCATAGCATTTCACAGGTGCTCGGAAAAGATGTCTAACCGAAAGAAAAAGTGTCCCGACGAAGAAAAAGCCTTCATGGTGTCCAATTTAGGTGAATCGGGGAAGATAAGGACCACGACCATCGGTCCAGGGGAGCCGTCACTCTCTAAACAGAAACATCATCATAGGAAAGCTTTTGAATACATATCAAAAGCGTTGAAAATTGACGAAGAGGATGCAGGCCGAAAAGAATTAGCTATAGAATATTACAAAAAAGGTATCGGCGAACTGGACAAAGGGATAGCTGTGGACGTCAATGGTCAAGGGGAAGCATGGGAACGAGCCAGGCGATTGCGGGACAAGATGACCACCAATCTTGCTATGGCAAAAGATCGTCTCGAAGTTCTCGAAAAAATGATGCAAAAACCCACCACAGACAATGGTGGCGACCCCTCAGCATGTGACACAAACAGGTCGAGACCGGGCACTCCCCAACTGAAGAGAAAGTTTGATTTCAGCCCTGCCTCCTCCCCTACACACCATCCAAAGTTAGCCTTACCTCCATCTTCTTCATCTCCATCATCTCCTCATCCAGGTGACGCCTTTATCAGCCTGGACTGCCAGTATCGGTGCTGCTTGCAGATAGGACTGGTTGCCACTGTCGCATCCACAGCTGCCATCATCATTGAATTTGAAGTGCATGTTTTTGGTGAGTCATCGTGTAAAGTCAGGAAAATCAATCAACGAAGCCATTATCCCTCTCGGGGGTGGGGGCTGGGGGAAGAAGCAGTTGCCTCGAAACCTTTGAAGCCATCCAAAAACCAGTTACTGGTGCACAAGAGCAACACCCTACCTCGCACAAGGAGTACATCCTCCTCCAGACAAGACAGCCCAACATCTTCACCCAAGAGACAACACCACAGGCGACAACTATCTCAGCCAGATATCAAGAGTTCGCCAAAGAAAGAAAAACAACTGCCCGCCAGCTTCAAAAATGTCGACAAAAAGTTGGCAAATTTAATTTTGAATGAAATTGTCGACTTTGGTCCCCCAGTTGCGTTCAGTGATGTTGctggacaacagactgctaaacaggccttacaagaaattgtcatccTGCCTTCTCTTCGACCTGAGCTCTTCACTGGACTTCGAGCCCCAGCACGTGGCCTCTTGCTATTTGGCCCACCAGGGAATGGAAAAACCATGCTGGCCAAAGCCGTTGCCAATGAGTCCAACGCAACATTCTTCAACATAAGCGCTGCCAGTTTAACTTCAAAATACGTTGGAGAAGGTGAAAAATTGGTTCGTGCACTTTTTGCAGTCGCAAGAGAACTGCAACCTGCTGTCATCTTTATTGATGAAATTGACTCTCTATTATGTGAGAGAAGAGAAGGTGAAAATGAAGCGAGCCGCCGCTTGAAAACTGAATTTCTCATTGAATTTGATGGACTCAGCGGTAGTTCAGATGACAGAATTTTAATTATGGGAGCAACAAATCGACCCCACGAATTGGACGATGCTGTGCTGCGACGGTTTGCAAAACGAGTCTACGTAACAATGCCTGAAAATCATACACGGAGGTCGATGCTGGTACATTTATTGGCAAAGCATGGTAACCCTTTGACAAGTAAAGAAATGGAGGGCCTCGCCAGACTGACCGAAGGATATTCGGGGAGCGATCTGACAGCTTTGGCCAAAGATGCGGCCTTAGGACCAATACGCGAGCTCTCTCCTGCTGAGGTAAAATGCCTGGACGCGAGCAAGGTCCGTTGCATACAAATGATTGACTTTTTAGAATCCCTGAAGAAAATCCGCAGGAGCGTCCCAATTGACAGTCTTGATAAATACGAAAAATGGAATCAAGAGTATGGCGATATAACAACATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR007330	Domain	MIT domain	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR017179	Family	Spastin	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036181	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008568	Molecular Function	microtubule severing ATPase activity	Interproscan
GO:0015630	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-