Gene detail

Detailed information of pred2_50725.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_50725.1	PROTEIN CBG26694	Sc3x4tf_909	54930	40923	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_50725.1

ATGAATGAAGAAAACAAACAACTATTCGGATGTGTGAGTCGAAACTGTAAAGAGATATACGAGGAAGGAGGACTGTCCGGTTGTTTTGCCCAGCACAAACTCAAACACATAGTTTCCTATTTATTTCTGTCCATCAACTCAACTTACTTATGTAATACACATACGTGCATATACATGTATATACATGTATATACGTTTATCTTTTTTCTTCTTATTAAATCTATCAACATGATTTTCACGAAAATTCATACACATTTGAGCTTTGCCCATCACAAACACAGACATATATTTCTTTCCGTGCGCCGGGCTGCCTCGTCACTGATGTATGTAACTTGGGATCCGAAACGCTACCAGCCACTTTATACTAATCGCTGGCAAGTGGCAATCAGAAGATTGTGTAAAGAGAAGGACGCTGAAATGGCTGCACGATCATTTTCTGCCAATATTCCGCCTCCTGAGAAAATGTCTGGAAACGTGGCTAGCAATTGGAGGAGATTTAAACGAAACTTTTTAAATTATTCGATTGCCAGTCGACTTTCAAAGGAAGTCGATACTGAGTATCAAACTTCGGTATTTCTTGCGACTATTGCGGAGCCTTGTTATGATATTTATGAAGGATTACAATTTGAGAGTGAAGATAACAAAACGGATCTGGGCGAAGTGATTCGAACATTTGAGGAATTTTTCATTGGTGAGACTCACGAAGCTTATGAGTCTTATACATTTCACCTTCGGAAACAGGAATTTTCTGAAAATGTTTTGCGCCAACTTGCAAAAAACTGCAACGTTGGACAGTTAACGTACAGACTGATTAGGGATCAAGTAGTTGTTGGTGTGAAAGATGATTTATGTAGAAAGTGTTCGAGATTAGGACATTACGCAACTGTTTACAAAAATAATTCGAACATTAGGGTAGTTACAGAGGAAGACAACCATTTTCTAGGATCAGTTATGTTAGAGAAGGTAAATAAAATCGGTGAAGAAAAGATCGGATGGCAAGCTAAAGTAGAAGTCACCACCGCAGTCTGCAGCAAAATTATCAATTTTAGATTAGATACCGGCGCAGATGTAACTGTAGTACCAGACCGGTTCTTCAGGAAGAATTCTCCTGTAGTCCAACCAACCAACAAAAGATTATATGGACCAGGTCGACACAAAATAAAAGTCCTTGGGAAAGTGAATGCAACACTGAGCTACCGGAAAGCAACTTCACAACAGGAACTATACGTTGTGCAAGATTTAGCTGAACCGTTATTGGGTGGACCAGCAATCAACGCTCTAAATCTATTGAGTAAAATCAATATGGTGAAAAGCGAAGGTCACCAATACAAAAAAGACTTCCCCAGTGTATTCACAGGCCTAGGAAAGCTAGAGCATGTGTATAAAATTCATTTGGATGAGACAGCCCAACCGTTTTCAATCGCTGCCCCCAGACGACTACCACTTCCCATGAAGAAGAAAAAAATTATCCGTCCAGTGAAGTCCCCAACAGACTGGTGTGCTCCCATTGTAGCAATTCCGAAAAAGGATGGAGGAGTCAGACTTTGTGTCGACTTTTCAGAACTGAATGGAAGTGTGAAAAGGGGAAATTTTCCACTTCCCTCAATGGATCAACTTCTTGCTGAACTTGATGGAGCCACAGTGTTCACAAAATTGGATTGTAACAGTGGTTTCCACCAAATAATTATGCATAAGGATTCGCAGGAGTTAACCACTTTCATTGCACCGTTTGGACGATTCTGCTACCTACGTCTACCTTTTGGCATAAGCTCTGGACCAGAAACTTTCCACAGAGAAATGTCACACATTGTGTCCGGAATACCAGGGGTCATTTGTGACATTGATAATGTCCTTATAGGTGGAAAAACACAAAAAGACACCTTGGATCGTCTACATGAAGGACACCAAGGACTTTCCAAGCAAATTGCTGAGAAAATAGGAGGGTGCAGTATCTGTGAGAAGGAAAGGAAACATCCTCCAGAGCCACTACAACCTAGCAAGTTACCCGACTACCCATGGCAGAAGGTAGGAATGGACTTGTTCAAACTGAAGGGACACCATTATCTAATAGTCATTGACTATTATTCCAAATGGATAGAAACAGCTCATCTACAGACAACGATATCTAGCAGTATTGTTAACCATTGCAAATCAATATTTGCTAGATACGGAATCCCCGAAGTTGTCATTTCTGATAATGGTCCCCGGTTTATATCCAAAGAGTTCTTGGATTTCTCTGAAAGTTTTGGCTTTGTGCACCTCACAAGTAGCCCCCATTATCCACAAGGAAACGGAGAAGCGGAACAACCTGTTCAAAAGTCAAGTGATCCGTACATCGCATTGCTCAACTATCGCAGCACTCCACTCCAACATGGCAAGAGTCCTGCAGATTTGTTAATGAACAGAAAACTCAGAACTCGTATTCCAGCACTGTCTCAACAAAATATATTCTGCCAACAAAATGTTGAGAAATTCAAACATTCTGACTGTCAGCTCAAAATGAAACAAAAAGTTAATTTTGACAAGCGTCATCGAGCTAGAGAGCGTACACCCTTTACAGAAGGACAGCCAGTTTGGTTGAAGACACCCAAAACTAGTTCAGCCAAAGTGGTGAAAACTTTATCACCATGGTCATTAGTCGAAACCGTCGAAACCGAAGCCATCTTTGTAATAGAAGTAGCTACACCAGCAGAATTGTCTACCTTACCAAACATACCCAGAGACATTCCTGAGTACAGCAGCCGTGACAATTCGACAGATCAGCTTGCAGAACAAATTGACCAACCAGACACCCAGTTCACTGCGCACCGGGATGTCCCACCTGTCAACTTGAGAAGTCCCAAGCCAGCAGTGTACACCAGAAGTGGTCGGAGAATTCGACCACCGAATAGACTTTCATTA

Transcript

pred2_50725.1

ATGAATGAAGAAAACAAACAACTATTCGGATGTGTGAGTCGAAACTGTAAAGAGATATACGAGGAAGGAGGACTGTCCGGTTGTTTTGCCCAGCACAAACTCAAACACATAGTTTCCTATTTATTTCTGTCCATCAACTCAACTTACTTATGTAATACACATACGTGCATATACATGTATATACATGTATATACGTTTATCTTTTTTCTTCTTATTAAATCTATCAACATGATTTTCACGAAAATTCATACACATTTGAGCTTTGCCCATCACAAACACAGACATATATTTCTTTCCGTGCGCCGGGCTGCCTCGTCACTGATGTATGTAACTTGGGATCCGAAACGCTACCAGCCACTTTATACTAATCGCTGGCAAGTGGCAATCAGAAgattgtgtaaaGAGAAGGACGCTGaaatggctgcacgatcattttctgccaatattccgcctcctgagaaaatgtctggaaacgtggctagcaattggaggagatttaaacgaaactttttaaattattcgattgccagtcgactttcaaaggaagtcgatactgagtatcaaacttcggtatttcttgcgactatTGCGGAGCCTTGTTATGATATTTATGAAGGATTACAATTTGAGAGTGAAGATAACAAAACGGATCTGGGCGAAGTGATTCGAACATTTGAGGAATTTTTCATTGGTGAGACtcacgaagcttatgagTCTTATACATTTCACCTTCGGAAACAGGAATTTTCTGAAAATGTTTTGCGCCAACTTGCAAAAAACTGCAACGTTGGACAGTTAACGTACAGACTGATTAGGGATCAAGTAGttgttggtgtGAAAGATGATTTATGTAGAAAGTGTTCGAGATTAGGAcattacgcaactgtttacaaaaataattcgaacattagggtagttacagaggaagacaaccattttctaggatcagttatgttagagaaggtaaataaaatcggtgaagaaaagatcggatggcaagctaaagtagaagtcaccaccgcagtctgcagcaaaattatcaattttagattagataccggcgcagatgtaactgtagtaccagaccggttcttcaggaagaattctcctgtagtccaaccaaccaacaaaagattatatggaccaggtcgacacaaaataaaagtccttgggaaagtgaatgcaacactgagctaccggaaagcaacttcacaacaggaactatacgttgtgcaagatttagctgaaccgttattgggtggaccagcaatcaacgctctaaatctattgagtaaaatcaatatggtgaaaagcgaaggtcaccaatacaaaaaagacttccccagtgtattcacaggcctaggaaagctagagcatgtgtataaaattcatttggatgagacagcccaaccgttttcaatcGCTGCCCCCAGACGACTACCACTTCCCATGAAGAAGAAAAAAATTATCCGTCCAGTGaagtccccaaCAGACTGGTGTGCTCCCATTGTAGCAATTCCGAAAAAGGATGGAGGAGTCAGACTTTGTGTCGACTTTTCAGAACTGAATGGAAGTGTGAAAAGGGGAAATTTTCCACTTCCCTCAATGGATCAActtcttgctgaACTTGATGGAGCCACAGTGTTCACAAAATTGGATTGTAACAGTGGTTTCCACCAAATAATTATGCATAAGGATTCGCAGGAGTTAACCACTTTCATTGCACCGTTTGGACGATTCTGctacctacgtcTACCTTTTGGCATAAGCTCTGGACCAGAAACTTTCCACAGAGAAATGTCACACATTgtgtccggaatACCAGGGGTCATTTGTGACATTGATAATGTCCTTATAGGTGGAAAAACACAAAAAGACACCTTGGATCGTCTACatgaaggacaccaaggactttccaagcaaattgctGAGAAAATAGGAGGGTGCAGTATCTGTGAGAAGGAAAGGAAACATCCTCCAGAGCCACTACAACCTAGCAAGTTACCCGACTACCCATGGCAGAAGGTAGGAATGGACTTGTTCAAACTGaagggacaccattatctaatagtcattgactattattccaaatggatagaaacagctcatctacagacaacgatatctagcagtattgttaaccattgcaaatcaatatttgctagatacggaatccccgaagttgtcatttctgataatggtccccggtttatatccaaagagttcttggatttctctgaaagttttggctttgtgcacctcacaagtAGCCCCCATTATCCACAAGGAAACGGAGAAGCGGAACAACCTGTTCAAAAGTCAAGTGATCCGTACATCGCATTGCTCAACTATCGCAgcactccactccaacatggcaagagtcctgcagatttgttaatgaacagaaaactcagaactcgtattccagcactgtctCAACAAAATATATTCTGCCAACAAAATGTTGAGAAATTCAAACATTCTGACTGTCAGCTCAAAATGAAACAAAAAGTTAATTTTGACAAGCGTCAtcgagctagagagcgtacaccctttACAGAAGGACAGCCAGTTTGGTTGAAGACACCCAAAACTAGTTCAGCCAAAGTGGTGAAAACTTTATCACCATGGTCATTAGTCGAAACCGTCGAAACCGAAGCCATCTTTGTAATAGAAgtagctacaccagcagaattgtctaccttaccaaacatacccagagacattcctgagtacagcagccgtgacaattcgacagatcagcttgcagaacaaattgaccaaccagacacccagttcactgcgcaccgggatgtcccacctgtcaacttgagaagtcccaagccagcagtgtacaccagaagtggtcggagaattcgaccaccgaatagactttcattatga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-