Gene detail

Detailed information of pred2_49542.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_49542.1	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29	Sc3x4tf_198	5703056	5512844	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_49542.1

ATGAATAAAAAAGCGTGGAGAAAGTGCGGTCGTTCAAGTCTAAAGTCTGCCGGACAGACAGACAGACACTTGAAGCTAGCGAACAACCTACTCTCTCTCTCTACTAGGAAGCGTGGTCACAGAGATGACCGCCCGCCAAAACTTGATTTTCCAACAGTCATGAACGAGCTAGGATACATCCAATACATATCATCCAGCTCATACATCATCAGAGCGAATGCCTACCTTACTAGAGTTCAATTTGATGGTGTTAATTCTGTAAAATATCGAAGAAATAGTCGAGCTAAACAATCCGTAGACACCATTCTAGTATTCAGTAACAATATGGCGGCTGGGAGTGACGTCCGACAGACTTTCTTCCAGGGATGGGTCAGAATCCAGTTTATCTGGAGTCTACTCTGTTCAAATTTTGAACAGGATCACGTCAAAGCTCATCATTTGTCTGGAATGTATGGAAATGTCTCTACAAAAGAGTTCAGTCTCACTATGAGTCTCAAGAAGATCAACATCATGAGTCAAGGGGTCAGCATCTCCATCAGGTACTATACGTTTGAGGTGAAAAACTTCACCTACCTTGGTTCCGCCATCTTCAGCAGCATCTCCCTGGACACTAAGCTGAACTCACAAATTGGCAAGACAGCAGCAGAAATGACCTACCTAGTAAAGAGGGTCTGGGACAACTCCATACTGAACATCAACACTAAAATAAGGACTTCTGCATTCACCTTCAAAATGTTACGGAAGTTGCTGTCTGCATCAGTTGTCACCATCAACCAACATCTTCATCATGTCACACCAAATGTCATACCTCTTGCTGCTATCAGATACAATTCTAGCTTGGTACAACAATTTCAACAAGCAAATTTGAAGACAATATTCAGAACCAGCGAACAAGATCCTCTAATGTTCGTATGTTATGTTCGATTGTCAGACAATAGGTGGACATCACAAATATGTTTGATATCCAAAAGCACAGAAATGAAAGAGAAGACTCTCAATGAGGTGGAATCAACTGATGATAGGAAGGAACTGGCAAAATGTGGCCAGGATGATATTACTTATTACTTTAACAAGATAAGAGACTCTTCAATATATTACTTACACCTGGTAACAACTGGCTTGGAAATGAACCACAACATGTTACATGAAGGATTATTCTACAGAGTGCCAGAAAATTATAGATCCCAAATTTTTGGCATAAAAGGCCTAGGCACTGATTTTATGAAACAGAGTGAAGTTTTTCAAGAGACATGTATCATGGTGCGAAAACCTGCCGTGGAAGTCTTGGACTATGTCAAGAATGCAAACTATGACCATCCTGTCCTAAGAATTATTTTATATGGAGAAATGGGTGTTGGTAAAACCCTGACCTTAGCTCATGTTATGCATGCATGTGTCACACAAGGTTGGATCTTGGTACATATCAGTTGGCCCTCCATTTGGAAAAAAACCTGGAAGGAAATTTCTATGTCCTCCTACAAACCAGGCCGTATTGACTTTCCAATTATTTCTGTTGAGTGGTTAAAATTATTCCAAGCTCAAAATGAATCCTTTTTAAATGATTTGAAGGGTTTAACCAGACCACGGTATGCAACAGATGTTATTGGTATTATCTTGAAAGAACTGAAGAAAGTAGCAACAGAAAAGAAACATCGAGTTTTGGTTGCTGTGGATGGCCTAAATGGATTGTGGGGAGACACCAGTGTCAAGGACGAAAAAAAACAATATAATAATGGAATGGTGATTGGCATCGTTGACAAAGTTGCCAACCCTTCACATTCACGAGAGAAGTGTACACCTTTTTACCTGTTGGAGAAAAAGGCATTTGAGATGATGGAGCCTTTTATTCCAGTTCATGTTCCTAAATACAATGATAAAGAGATTCACAGCTGCCTGGATTACTACGTTGACAGACTATGGTTACAACATCCACTAGCCAAGACTGAAGAAGGCAAGAATGAATTCATATTTCTGAGTAATCACAACCCTTACCAGCTGACACAGGTGAGTGGAACAGCCCTGATGGAGAATCTTTTAGTTAATAATAATACCCTGAGGAATGAATTTGGAGAAGAAAGTGTCTTTGAACTGAGA

Transcript

pred2_49542.1

ATGAATAAAAAAGCGTGGAGAAAGTGCGGTCGTTCAAGTCTAAAGTCTGCCGGACAGACAGACAGACACTTGAAGCTAGCGAACAACCTACTCTCTCTCTCTACTAGGAAGCGTGGTCACAGAGATGACCGCCCGCCAAAACTTGATTTTCCAACAGTCATGAACGAGCTAGGATACATCCAATACATATCATCCAGCTCATACATCATCAGAGCGAATGCCTACCTTACTAGAGTTCAATTTGATGGTGTTAATTCTGTAAAATATCGAAGAAATAGTCGAGCTAAACAATCCGTAGACACCATTCTAGTATTCAGTAACAATATGGCGGCTGGGAGTGACGTCCGACAGACTTTCTTCCAGGGATGGGTCAGAATCCAGTTTATCTGGAGTCTACTCTGTTCAAATTTTGAACAGGATCACGTCAAAGCTCATCATTTGTCTGGAATGTATGGAAATGTCTCTACAAAAGAGTTCAGTCTCACTATGAGTCTCAAGAAGATCAACATCATGAGTCAAGGGGTCAGCATCTCCATCAGGTACTATACGTTTGAGGTGAAAAACTTCACCTACCTTGGTTCCGCCATCTTCAGCAGCATCTCCCTGGACACTAAGCTGAACTCACAAATTGGCAAGACAGCAGCAGAAATGACCTACCTAGTAAAGAGGGTCTGGGACAACTCCATACTGAACATCAACACTAAAATAAGGACTTCTGCATTCACCTTCAAAATGTTACGGAAGTTGCTGTCTGCATCAGTTGTCACCATCAACCAACATCTTCATCATGTCACACCAAATGTCATACCTCTTGCTGCTATCAGATACAATTCTAGCTTGGTACAACAATTTCAACAAGCAAATTTGAAGACAATATTCAGAACCAGCGAACAAGATCCTCTAATGTTCGTATGTTATGTTCGATTGTCAGACAATAGGTGGACATCACAAATATGTTTGATATCCAAAAGCACAGAAATGAAAGAGAAGACTCTCAATGAGGTGGAATCAACTGATGATAGGAAGGAACTGGCAAAATGTGGCCAGGATGATATTACTTATTACTTTAACAAGATAAGAGACTCTTCAATATATTACTTACACCTGgtaacaactggCTTGGAAATGAACCACAACATGTTACATGAAGGATTATTCTACAGAGTGCCAGAAAATTATAGATCCCAAATTTTTGGCATAAAAGGCCTAGGCACTGATTTTATGAAACAGAGTGAAGTTTTTCAAGAGACATGTATCATGGTGCGAAAACCTGCCGTGGAAGTCTTGGACTATGTCAAGAATGCAAACTATGACCATCCTGTCCTAAGAATTATTTTATATGGAGAAATGGGTGTTGGTAAAACCCTGACCTTAGCTCATGTTATGCATGCATGTGTCACACAAGGTTGGATCTTGGTACATATCAGTTGGCCCTCCATTTGGAAAAAAACCTGGAAGGAAATTTCTATGTCCTCCTACAAACCAGGCCGTATTGACTTTCCAATTATTTCTGTTGAGTGGTTAAAATTATTCCAAGCTCAAAATGAATCCTTTTTAAATGATTTGAAGGGTTTAACCAGACCACGGTATGCAACAGATGTTATTGGTATTATCTTGAAAGAACTGAAGAAAGTAGCAACAGAAAAGAAACATCGAGTTTTGGTTGCTGTGGATGGCCTAAATGGATTGTGGGGAGACACCAGTGTCAAGGACGAAAAAAAACAATATAATAATGGAATGGTGATTGGCATCGTTGACAAAGTTGCCAACCCTTCACATTCACGAGAGAAGTGTACACCTTTTTACCTGTTGGAGAAAAAGGCATTTGAGATGATGGAGCCTTTTATTCCAGTTCATGTTCCTAAATACAATGATAAAGAGATTCACAGCTGCCTGGATTACTACGTTGACAGACTATGGTTACAACATCCACTAGCCAAGACTGAAGAAGGCAAGAATGAATTCATATTTCTGAGTAATCACAACCCTTACCAGCTGACACAGGTGAGTGGAACAGCCCTGATGGAGAATCTTTTAGTTAATAATAATACCCTGAGGAATGAATTTGGAGAAGAAAGTGTCTTTGAACTGAGATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10236	DAP3	Mitochondrial ribosomal death-associated protein 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008092	Family	Small ribosomal subunit protein mS29, metazoan-type	Interproscan
IPR019368	Family	Small ribosomal subunit protein mS29	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12810	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005761	Cellular Component	mitochondrial ribosome	Interproscan
GO:0005763	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-