Gene detail

Detailed information of pred2_47735.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_47735.1	MICROSPHERULE PROTEIN 1	Sc3x4tf_105	1619848	1537788	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_47735.1

ATGTCTGATCGTATCGATTTAGACCAGCCTCAGTGGGATCTCAAGACCTTCTATGGCAGACTCCGTTATTTCGCCTGGGTGACTGACCCAAGGACATGTATGACACCAACTCCCCAACTTTATGAAGCCAAGGATCTCGTGGAAAAATACAGGAGAAGAGAAGAGCCTGCCGGAATTAGTCATGAACAGATCCGAAAGGCCCAACAGCTGAGCATGTCTGCGTTCCATCCTGATTCTGGAGAGTTACAAAATTTTATTGGTAGAATGTCATTTCAAGTTCCTGGTGGAATGTGTCTCATTGGTTGTATGATCTCTTTCTACAAGACAACATCTGCCGTTATATTCTGGCAATGGGCAAATCAGTCTTTTAATGCCTTAGTCAATTATACAAACCGAAATGCTGCCTCGGATATTTCCCAGAAGAGGTTAGCAGTTGCTTACGTAAGTTCCACAACGTGTGCCCTTGTTGCTGCCCTGGGTTTGAAAACTGTTTTGGCCAGAAGAGCGTCTGGTTTGATGCAAAGATTCGTCCCATTTGCTGCGGTGGCTGCAGCCAATATCGTAAATATTCCATTGATGCGACAGAGTGAAATTCTGGATGGCATCACAGTTTACGATGAAAACAAAAATCCTGTTACGACTTCCAAGTATGCTGCAGCGAAAGGAATTTCTCAAGTTGTGTTTTCCAGAATAGTCATGTGTGCCCCTTCTATGACTTTGCTGCCATTGTTATTTGAGCACATTGAGAAGTACAGATGGATGCAACGTATGAAGTTCCTGAATGCTCCAATGCAAGTTCTGGCCTCCGGGGCATTCTCAATCCATCACTCCAAGCTGTCAAAGAAAAGCCTGGAAGAGTTGAAAGAAAAATATGGTGAGAACATTCCAGAACATCTTTACTTCAACAAGGGATTAATGCAAGCTTCAACTCCAGTCCAACCACGGCGGAGTTCCACTCGCTCAATCAAACGTAAGAAGTTTGACGATGAACTTGTTGAAAGTAGCTTGGTCAAGTCTGATCGTGGAAGATTGAAGGCGCTTCCTGTCATTGAAAAGTCTGAAGCCGTCGGTACCCCAGACGCTGTGGCTGCCCAAGTGCCGGAGAAGAAGAAAGTTACAGTTCCACTACCTGAAAAGAAAAAGGACGCTGTCCCTGCACCAGTTCCTGCGTCTACAAAAGACCTTGGCCGATGGAAACCCCAGGATGATTTGGCTTTGATCACAGCAGTCCAACAGACCAATGATTTACCCTCAGTTCATGTTGGCATCAAGTTCTCTTGTAAATTCAACTTGAAAGAAATTCAAGAACGCTGGTATGCACTACTCTACGATCCTGTTATTTCCAAATTAGCTGTGACTGCTATGAAACAACTGCATCCGGATGTTATTGCTAACATCCAGTCCAAGACACTTTTTAGTAAAAGTGAAGAATCCCTCTTGGGAAAAGTCACATCAACTAGTCAGCCAACATTGGAGATCTTCCAAGAATTACTCAATAAATATCCGGATGTTTTCCACCCTTCACGAATGGCCGCTTGTTTACAAAACCATTGGGTCTTGTTGAAACAATATCATTTATTACCAGACCAATCAGTTCAACCAATGCCACGGGGTGACCATGTATTAAGCTTTTCAGATGTTGAAGACATGATGGATGATGATGAACTTCAGGATCCTAGAGATGAAGTTTTAGAACATGAATTAGATATTGCCGATCGGCGAAACAAAAGGGAAGTACGACATCTGGAACAGGAATTGCCCAAGTGGCAGGTGTTGGTTGACAGTGTCACAGGTGTGAGTCCTCCTGATTTTGATCATCAAACCCTGGCTGTATTGCGTGGACGTTTAGTCCGTTATTTAATGAGGTCGAAAGAAATCACTCTTGGTAGGGCAACCAAAGATAATCAAATAGATGTGAACCTTTCCCTGGAAGGACCTGCCTGGAAAATCTCCCGGCTTCAAGGCGTCATCAAATTACGTCACACTGGAGATTTCTTCATTGCCAATGAAGGAAAACGTCCAATTTATGTGGATAGCCGGCCTGTCCCCACTGGCAACAAACAGAAGTTAAACAACAATGCTGTTGTTGAGATTTCCTGTTTACGGTTTATATTCTTGATCAACCAAGACTTGGTGAATGCGATTCGTGCTGAGGCACAGAAGATGACAGGCTCTCATGGCACGGCAGAGGCCAGTTTACGGCACCATCTTAAAACCAACATGGCTTGCAAGCAAGGCTTCGTCCTTGCCAGGAGGTTACCCTTAAAATGTCGATCTCAACTCAGCAGTGGAGGACCTCTCTGCAATTCGACCCCCAGCATCCCAAGCATCCCACTCACAACACCATTACCTCAGGTGCCACCCCCTCAGTATGCCAAGATCACCACAGATGGACATGACACAAAGGTCACAGTTCTCCCAAATGGTCTCCGCGTGGCATCGCAGAATAAATTTGGACAATTCTGTACCGTTGGCGTGGTCATTGATTCTGGTTCCAGATATGAAGTGGCCTACCCTACTGGAATTTCCCACTTCCTGGAAAAACTATCTTACATGTCAACATCCCGATATAAGAACAGAGATGAAATTCTTCAAGAATTAGAGAAACATGGTGGCATTAGTGATTGCCAAGGATCTAGAGATACTTTGATCTATGCCATGTCAGCCAAAACAGCCAGTTTACCTTCTATTATTGAAATTTTATCAGAAGTTGTTTTGAAACCCAACCTCACACATGAAGAAATTGAAGACGCTCGATGGATGATTAGATTTGAATTGGAATCTCTCAACATGAAACCAGAACCAGAACCATTATTAATGGAATATATTCATGCTGCCGCTTATCGAGACAACACTCTTGGTTTGGCGAAGATTTGTCCGTCTGAGAACGTTTCTGTGATAGACAAACGCCTGCTTCACACCTACTTGCATAATTACCACACCCCTGAACGTATGGTGTTAGCTGGGGTTGGAATGGAGCATGATGCCCTTGTCTCTGTGGCAGAAAAATATTTTGGAAATGCGAAACCAACTTGGAATGAAGATAGTGAACTGATTGCACAAACAAAAGGCCCCGATAAATCATTGTCTCAGTACACGGGCGGAATTGTCAAAATGGAGAAGGACTTGTCTAATGTGAGCATGGGACCAACCCCGATGCCTGAATTGGCTCACTTTGTTGTGGGTCTGGAGAGCTGTTCTCACAAAGACGATGACTTCATAGCATTTTGTGTTCTCAGTATGTTGATGGGTGGCGGTGGCTCTTTCTCGGCAGGTGGACCTGGCAAGGGCATGTACACTCGGCTTTACCTGAATGTATTAAATAAGCATCATTGGATGTTCAATGCGACTGCGTACAATCATACCTATGATGACAGTGGCCTCTTCTGTATTCATGCAAGTTCACATCCCTCACAGCTTCGACATGTTGTAGAAGTAATTATCCGAGAACTTGTCAACACGGCTGGAGTCGTATATGAGGATGAACTCAACAGAGCCAAGACCCAACTTCAGTCGATGTTGATGATGAACCTGGAGGCCCGACCAGTTGTGTTTGAAGATGTTGCACGACAAGTGCTGACAAACGACCAAAGAAAGCCACCTCAGTTTTTCTTTGATAAAATAGCTCATATTACAGTTGATGATATCCGCCGTGTGGCTAACCGAATGCTGACTAGCAAACCAGCTGTCGCCGCTTACGGTTCGTTGTCCAAATTGCCGAAATATGAAGACATTCAATCTGCATTGCTTAGCAAAGCTGGTAAGATGCCGCAGCGGTTCTCTCTATTTCGA

Transcript

pred2_47735.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00675	Peptidase_M16	Insulinase (Peptidase family M16)	Family	Interproscan
PF03820	SFXNs	Sideroflexins	Family	Interproscan
PF05193	Peptidase_M16_C	Peptidase M16 inactive domain	Domain	Interproscan
PF13325	MCRS_N	N-terminal region of micro-spherule protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR004686	Family	Tricarboxylate/iron carrier	Interproscan
IPR007863	Domain	Peptidase M16, C-terminal	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR011249	Homologous_superfamily	Metalloenzyme, LuxS/M16 peptidase-like	Interproscan
IPR011765	Domain	Peptidase M16, N-terminal	Interproscan
IPR025999	Domain	Microspherule protein, N-terminal domain	Interproscan
IPR037912	Family	Microspherule protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13233	MICROSPHERULE PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002151	Molecular Function	G-quadruplex RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0015075	Molecular Function	monoatomic ion transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031011	Cellular Component	Ino80 complex	Interproscan
GO:0044545	Cellular Component	NSL complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0071339	Cellular Component	MLL1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-