Gene detail

Detailed information of pred2_46809.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_46809.1	IONOTROPIC GLUTAMATE RECEPTOR	Sc3x4tf_2082	128033	107997	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_46809.1

ATGCCGGAACAGAACGAATCAAAATTGAGCGAATCTATTTTGGAGACGTCTAGTGTAAGCCCTTACCTTGGACCTCTGCATTTTGACACAGAAGGTCATTTGCAAATGTCCAACTTCATAATAAAAAATTTGGTGCACGATGGTGAGCGAGTCACATGGAAAGAGATTGGGTACATACGCAACGGTGACGTGAGGATTCGCGAGCCAATTTGGCCAATTGACCATCTCTTACCTTCCTCAGTGAACGGTCGAACACGATATAGAATCGTGACAAACCCTGTGAAACCATTTGTAATGGAAGAAGCACCCCACACAGATTATAACGAATGTGTTTCGGATACTCCCTGTTTGAAACTTTCCTCAAAGGACAAAATACGAACGATCGAAGCAATTCGCGATTTTGAAGCCGGGGTTTTAAATCAGAGCAACCCTTGGGAGATACGTTGCTGCCGTGGACTATCTATAGATCTACTCAACAAGCTATCCAACGATCTTGATTTTGATTTCACTCTGTTCTTGGTTTTCGACAAATCCTACGGTGCCTACATCAATGGTTCCTGGAATGGTATGATCGAAGACCTCCTCGAAAGCACCGCGCACATCGCTATGGCCGCGTTTAGTATTACCAGATCTCGTGTAAAGGCCATTGACTTTACCGACCCCTACTTTTTCTCGGGGTTTTCCATTTTAGTGGCGGACCGCGTGCGCGATCCACACATGCAGGCTTTTCTAGAGCCGTTTTCCATTGGGGTTTGGTTTGCGATTTTCATCAGCGCGACTGTGACGGCGATTGCTATGGCCCTTTTCGAATGGAACAGTCCTTTCGGTCTGAACCCATGGGGCAGGAAACGGAAATCAAACTATACAATGGCTTCAGGCCTTAACATGGTCTATTCAGTGCTGTTTGGACACACCGTCAGTACAAAGTCTCCTAAAGCATGGCCAAGCAAAGTGATGCAAAATTTCTGGGCTTTTGCAGCTATATTTATTATCGCAAGTTATACTGCCAATCTCGCCGCTTTTATTGCGGGAAAAAATAATGGTGTCGGATACAATGGTGTATACGACAGCAGGGTGAGTAACCTAAATAATATAAGCTATTATTTTCTACTGGATGCCAGAGTCGGTGTACTTGGAGGGAGTGCCGTGGAAGCTTTTTTGAAACGCATCCATCCACCAATTTTCTACGCCTCGCAGAACTATCTGGTCAATTCTTCAGATACGGGCATCAGAATGTTAATATTATTCAACTTCTGTTGGTTCAAGTCACTGGTCATGTCTAAGAATGATTCGATAATCCCATTCCTCTCTGGAACGTTGTCCTCAACCCATGTGAGTCAGCAGTGCTTTATAGATGTACTTGTGGACCCTGACAGTAACACTGTAGTGTTTACCATTAAGGACTCCATTGATGTGCTCCTCTGCGACGATTCAAGACTCTATGAACATATACCCAATTGTAACGAATCTGTCGCGGCTGCGTCGATAGCAGGGATAACACAATTTTGTATTTCAGATCCTGCGCTGTGGTACGCTCAAATCGAAAAGTCTTTAACTATTAAAAACATCACAGCACAGACAAACACGTTTGCTTACGTGGTATCAGCTTTACCTCCGGAAATAGCCACTGAAGTAAGAGACCTTATTTTAAATCCTCCAGATTTTAGCCCTTACGACAAATTGAAAGCCGAGATCGTGTTACAAAATCTAGGAGATAAAAAACCATCTCAACTTTTGCGCAGATTAAGACTCCTATCAAGAAAATATCAGGACGACGGAATCCTAAAACATATTTTTCTACAAAGATTACCCTCGGAAACTCAACCGGTTATCATTTTCTGGAGGACAGAGGTGCCCGAATCTCTGTTGTTCCTTCTTCAGCTAAAGACAAGTATAGAGAGGCAGACAAACTTACAAGCAGTGTATACATCTACAATTAACACGATTCTTACAGATTTCCCGGACATCACAAAACCTAACTTCAACCAACTCACAACAAAACATAACATAACCCATTATATTGTCACTTCAGGACCTTCAGTTTCAGCTCGACCCAGACCACGAGATGAGTTCGACATTATGTTGAAACTTGGAATTATCCGACCTTCGGACAGCAACTGGTCAAGTCCTCTACATTTAGTTAAAAAGAAATCCGGTTCTTGGCGTCCATGTGGTGATTTTAGAGCTTTAAATAATATTTCAAAAGCAGACTGTAATCCTATCTCACATATACACGATGTTACCTCGGAGCTACAAGGTAAATCAATGTTTACTAAGCTCGATCGTATTAGAGCGTATCATCAGATCCCTGTTGAACCTTCAGATGTACCAAAAACTGTCATAATCACTCCTTTCGGTCTTTATGAATTTCTACGACTGCCTTTCGGTTTAGGAAATCCTGCTCAATCTTTCCAGAGGTTTATGGATCATGTCCTGCATGGTTTAGATTTCGTTTTTGATTATATTGATGACGTTTTAATTGCTAATTATTCTCCTAACGAACACGAACGACACGTACGTGCAGTGTTTGCCGTTTCCGAAAGTTCGGAATTGGTGGATATCGCGTTTCGGAGTTCCCAAATTATCACTACAGACAGAGGTACGCAATTCGAAGTTGTGTTATGTGCTCATCTGGATCACATTCATTGGCTTGACTACCTACCTTTGCTGTTCATGAACTGTTTATTCGATGAACTAATGTATGGAACTACCTTACGACTACCGGGACAACTAGTGGTTAAAGAACCCATTAAAGATTTCGACTTGACTTCTTTCGTCGATAAATTACGGCTTAAAATGTCTACATTAGCCCCTACTTCACCTAGGAATTGTACGCACGCATTGATAAGAGATTTGGTCGTCAAACACCCACTACAAACTGCATGTAAGTGTCCACTCAAAGTAGTGAGAAAACAACACAAATATTTCACTTTGGTTGTTAAAAACAAGGGACCAAATGTCTCTTTGGACACCACTAAAACCTGCAAATATGGCCAGCTAGATGCCTACCTAGGAGATTATCCTATCCTTGACTACGCCCGCGCCAAGTTAGACCCAAACTGCCAGCTAAAACTGGTGGGACAAACCTACGGAGAGGACGGTTACGGGATTGGTTTGCCAAAGAATTCGACAATACGATTTCTGACCGACATCCAGCGACTGTCCGCAACAAGGATAAGATCAAAATCGGAACATGGAATGTCAGAACGC

Transcript

pred2_46809.1

ATGCCGGAACAGAACGAATCAAAATTGAGCGAATCTATTTTGGAGACGTCTAGTGTAAGCCCTTACCTTGGACCTCTGCATTTTGACACAGAAGGTCATTTGCAAATGTCCAACTTCATAATAAAAAATTTGGTGCACGATGGTGAGCGAGTCACATGGAAAGAGATTGGGTACATACGCAACGGTGACGTGAGGATTCGCGAGCCAATTTGGCCAATTGACCATCTCTTACCTTCCTCAGTGAACGGTCGAACACGATATAGAATCGTGACAAACCCTGTGAAACCATTTGTAATGGAAGAAGCACCCCACACAGATTATAACGAATGTGTTTCGGATACTCCCTGTTTGAAACTTTCCTCAAAGGACAAAATACGAACGATCGAAGCAATTCGCGATTTTGAAGCCGGGGTTTTAAATCAGAGCAACCCTTGGGAGATACGTTGCTGCCGTGGACTATCTATAGATCTACTCAACAAGCTATCCAACGATCTTGATTTTGATTTCACTCTGTTCTTGGTTTTCGACAAATCCTACGGTGCCTACATCAATGGTTCCTGGAATGGTATGATCGAAGACCTCCTCGAAAGCACCGCGCACATCGCTATGGCCGCGTTTAGTATTACCAGATCTCGTGTAAAGGCCATTGACTTTACCGACCCCTACTTTTTCTCGGGGTTTTCCATTTTAGTGGCGGACCGCGTGCGCGATCCACACATGCAGGCTTTTCTAGAGCCGTTTTCCATTGGGGTTTGGTTTGCGATTTTCATCAGCGCGACTGTGACGGCGATTGCTATGGCCCTTTTCGAATGGAACAGTCCTTTCGGTCTGAACCCATGGGGCAGGAAACGGAAATCAAACTATACAATGGCTTCAGGCCTTAACATGGTCTATTCAGTGCTGTTTGGACACACCGTCAGTACAAAGTCTCCTAAAGCATGGCCAAGCAAAGTGATGCAAAATTTCTGGGCTTTTGCAGCTATATTTATTATCGCAAGTTATACTGCCAATCTCGCCGCTTTTATTGCGGGAAAAAATAATGGTGTCGGATACAATGGTGTATACGACAGCAGGGTGAGTAACCTAAATAATATAAGCTATTATTTTCTACTGGATGCCAGAGTCGGTGTACTTGGAGGGAGTGCCGTGGAAGCTTTTTTGAAACGCATCCATCCACCAATTTTCTACGCCTCGCAGAACTATCTGGTCAATTCTTCAGATACGGGCATCAGAATGTTAATATTATTCAACTTCTGTTGGTTCAAGTCACTGGTCATGTCTAAGAATGATTCGATAATCCCATTCCTCTCTGGAACGTTGTCCTCAACCCATGTGAGTCAGCAGTGCTTTATAGATGTACTTGTGGACCCTGACAGTAACACTGTAGTGTTTACCATTAAGGACTCCATTGATGTGCTCCTCTGCGACGATTCAAGACTCTATGAACATATACCCAATTGTAACGAATCTGTCGCGGCTGCGTCGATAGCAGGGATAACACAATTTTGTATTTCAGATCCTGCGCTGTGGTACGCTCAAATCGAAAAGTCTTTAACTATTAAAAACATCACAGCACAGACAAACACGTTTGCTTACGTGGTATCAGCTTTACCTCCGGAAATAGCCActgaagtaagaGACCTTATTTTAAATCCTCCAGATTTTAGCCCTTACGACAAATTGAAAGCCGAGATCGTGTTACAAAATCTAGGAGATaaaaaaccatCTCAACTTTTGCGCAGATTAAGACTCCTATCAAGAAAATATCAGGACGACGGAatcctaaaacaTATTTTTCTACAAAGATTACCCTCGGAAACTCAACCGGTTATCATTTTCTGGAGGACAGAGGTGCCCGAATCTCTGTTGTTCCTTCTTCAGCTAAAGACAAGTATAGAGAGGCAGACAAACTTACAAGCAGTGTATACATCTACAATTAACACGATTCTTAcagatttcccgGACATCACAAAACCTAACTTCAACCAACTCACAACAAAACATAACATAACCCATTATATTgtcacttcaggACCTTCAGTTTCAGCTCGACCCAGACCACGAGATGAGTTCGACATTATGTTGAAACTtggaattatccgaccttcggacagcaactggtCAAGTCCTCTACATTTAGTTAAAAAGAAATCCGGTTCTTGGCGTCCATGTGGTGATTTTAGAGCTTTAAATAATATTTCAAAAGCAGACTGTAATCCTATCTCACATATACACGATGTTACCTCGGAGCTACAAGGTAAATCAATGTTTACTAAGCTCGATCGTATTAGAGCGTATCATCAGATCCCTGTTGAACCTTCAGATGTACCAAAAACTGTCATAATCACTCCTTTCGGTCTttatgaatttCTACGACTGCCTTTCGGTTTAGGAAATCCTGCTCAATCTTTCCAGAGGTTTATGGATCATGTCCTGCATGGTTTAGATTTCGTTTTTGATTATATTGATGACGTTTTAATTGCTAATTATTCTCCTAACGAACACGAACGACACGTACGTGCAGTGTTTGCCGTTTCCGAAAGTTCGGAATTGGTGGATATCGCGTTTCGGAGTTCCCAAATTATCACTACAGACAGAGGTACGCAATTCGAAGTTGTGTTATGTGCTCATCTGGATCACATTCattggcttgaCTACCTACCTTTGCTGTTCATGAACTGTTTATTCGATGAACTAATGTATGGAACTACCTTACGACTACCGGGACAACTAGTGGTTAAAGAACCCATTAAAGATTTCGACTTGACTTCTTTCGTCGATAAATTACGgcttaaaatgtCTACATTAGCCCCTACTTCACCTAGGAATTGTACGCACGCATTGATAAGAGATTTGGTCGTCAAACACCCACTACAAACTGCATGTAAGTGTCCACTCAAAGTAGTGAGAAAACAACACAAATATTTCACTTTGGTTGTTAAAAACAAGGGACCAAATGTCTCTTTGGACACCACTAAAACCTGCAAATATGGCCAGCTAGATGCCTACCTAGGAGATTATCCTATCCTTGACTACGCCCGCGCCAAGTTAGACCCAAACTGCCAGCTAAAACTGGTGGGACAAACCTACGGAGAGGACGGTTACGGGATTGGTTTGCCAAAGAATTCGACAATACGATTTCTGACCGACATCCAGCGACTGTCCGCAACAAGGATAAGATCAAAATCGGAACATGGAATGTCAGAACGCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-