Gene detail

Detailed information of pred2_46093.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_46093.1	PROTEIN CBG26694	Sc3x4tf_2543	32045	57907	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_46093.1

ATGTCCCAAGCTTACGCACAGCTGCTATTGGACGATGAATCCAAGCAATACAAAGGTTTGTTTCAGTACAACAGTCTGTGTTTTGGAATTTCTTTTGCTCCTGGCATTTTTCAGAGAGACATGGAACAGTTACTTCAGGGCGTACCTGGTGCATTGTGTTACCAGGATGATATCCTGACTTGTGGTGCAACAGAGACTGTCCTTACTAAGTTACAGGACGCTGGACTAAAATTGTGTGCACTCAAAGTAACCGAGGTTACAAACCCAGGTTATCAAATTGACGGCAATGGTATACATCCTATAAAAGATAAGGCCATAGTTGAAGCCCCAGCACATACCAAAATTAAACAACTCCAATTTTACCTGGGTATGGCGTTAGTACATTTTGACCCTAACCTGCCAATCACTGTTGTAACCGATAGCAGCGCATACAGCATTGGTGCAGTGTTAAACCACAACATGAACGGTCAGGAATGTCCTATTACTTTTGCTTCTAGGACGCTAACCAAAACCGAGAGAAATTACTCCCACCTTGAAAAGGAGGCCCTGACTAGTGTTTTTGCCCTAAGAAATTTCACAACTACTTGTGGGGTCAGCCTTTATTTACTTTGGTCACTGACCAAAAATCACTCCTTGGAATTTTCTTCTCTGACAAGCCAGATGGCTTCTGGTAGAATTCACTGTTGGTCGTTGGTTCTTCAGGCTTACAAATTTAAGCTAGTTCATCGTTCTGGCACAATCCTTGTCTATTCTTTGGACAGTTCTCCTGTGACTGCATCCGAAATAAGAGTACATACCCGCACAGATCCTGTTCTTTCCAAAGTGTTCAAATATTGTGAACTTGGTTGGCTTACTTCTATTTGTGATTCTCAATCTGAGCCTCTTCCTTTCTTTCGTAAAAGAAATGAGATTTCCACTCAAAATGGTTGTCTACTATGGGGTTACAGGGTGATAGTTCTTTCTGCCTATCGCCAAACTTTACTTGCTGAACTTCATGGGGGGGGGGTCATGCACATCACATCAGCCGTGTATAAACCATCTACTAACGGTTTGGCTGAGAGAATGGTACAAACATTCAAGAGTGTGTTAAATAGTTCCTCAGAACCTTGGAGTACTGTACTAGACACATTTCTCTTCAAGTACCGGATTACTCCACATACTACTACCGGTGTATCACCAGTGGAGATGCTTTTCAAGCGTCGTTTCCGCTGTTGTCTCGACTTGTTAAGTCCTAGTGACCTTGTAGCTGGTCGCGTTCAAATTGATGCTGAAATAGCAAACATGGTTGATGTGGTTGCAATAATTGTGGTATTTACAGCCTACATTTTTGTATTTATTTTTGGCTTAATGCTGGTTAGAATTGTCAAGCTAAATGAAGAATGCACTCAGACAGAGAGGGAGCTTGTGGCTGGGCGTAATTTGCCTATTTTTGTGGGAATATGCACAATGACAGCACTAGTTGCACAAACAATTGGGAGTGAATTAAAATTAGTTATGGAACAAGTTGTTAAAATGGTCAATTATACTAAAAGTAGACCTCTTAAATCAAGATTATTTGCTCATATTTTAAAGACATATGAGCGAGCTTTCAAAACCCCATTTTGCACACTGAAGTTTGTTGGCTCAAGCATTGTCGTGTTTTTGAATTGGGGGCTAGGTGGCATTGTATTTGCCAAAAAGATGCGAGCCTGTAAATACTTAACCATGTTGGATCCATTCTACCAGAAATATGGCATCACCATGGTGGTGCCAATATACTTGGCTGCTTTGTGTGGAGATATTTTATGGTCAGCTTCTATTCTTATGGCTCTAGGTACCAGTCTTGGCATTATGACAGGCATGAATACTCGCCTTGCAACTAGTCTGTCTTCAGCTATAGCCATTATTTACACAGCATGTGGCCAAATCCTGGCCGTTGTTTACACAGATATTTTACAGTTGTTTCTCATTGTTGTTGGTTTGGCTGTGTGTAGTCCATTCATTCTATTGGATCATCGAGTAACAAATATCTTAGCTACTCAAAATCAATGGCTTGGCACGTTGGCAGCTGAAGATGTTGGTGTTTGGATAGACTTACTTATTACTATGACATTTGGCACAATTCCCTGGCAGTCATTTTTCCAACGAGTTCTCTCCATGCAGACCGCCGTACAAGCCCAAATGTTATCCATTGCTGGTGCTTTCTTTGCTATTATTCTTGTCATTCCAGCCATAATCATTGGAGCTGCTGGCTCTTCTGCAAATTGGAACCAAACCAGCCTTGGACAGTCTCCAATTGATATAAATGAAAGTTACCTGATGTTGCCATATGTCATCAAAGAATTCACACCAAGAATTCCAAGTTTACTTGGTAATTCTATTGAATTCTCTTTATTT

Transcript

pred2_46093.1

ATGTCCCAAGCTTACGCACagctgctattgGACGATGAATCCAAGCAATACAAAGGTTTGTTTCAGTACAACAGTCTGTGTTTTGGAATTTCTTTTGCTCCTGGCATTTTTCAGAGAGACATGGAACAGTTACTTCAGGGCGTACCTGGTGCATTGTGTTACCAGGATGATatcctgacttgTGGTGCAACAGAGACTGTCCTTACTAAGTTACAGGACGCTGGACTAAAATTGTGTGCACTCAAAGTAACCGAGGTTACAAACCCAGGTTATCAAATTGACGGCAATGGTATACATCCTATAAAAGATAAGGCCATAGTTGAAGCCCCAGCACATACCAAAATTAAACAACTCCAATTTTACCTGGGTATGGCGTTAGTACATTTTGACCCTAACCTGCCAATCACTGTTGTAACCGATAGCAGCGCATACAGCATTGGTGCAGTGTTAAACCACAACATGAACGGTCaggaatgtccTATTACTTTTGCTTCTAGGACGCTAACCAAAACCGAGAGAAATTACTCCCACCTTGAAAAGGAGGCCCTGACTAGTGTTTTTGCCCTAAGAAATTTCACAACTACTTGTGgggtcagcctTTATTTACTTTGGTCACTGACCAAAAATCACTCCTTGGAATTTTCTTCTCTGACAAGCCAGATGGCTTCTGGTAGAATTCACTGTTGGTCGTTGGTTCTTCAGGCTTACAAATTTAAGCTAGTTCATCGTTCTGGCACAATCCTTGTCTATTCTTTGGACAGTTCTCCTGTGACTGCATccgaaataagagtacatacccgcacagatcctgttctttccaaagtgttcaaatattgtgaacttggttggcttacttctatttgtgattctcaatctgagcctcttcctttctttcgtaaaagaaatgagatttccactcaaaatggttgtctactatggggttacagggtgatagttcttTCTGCCTATCGCCAAACTTTACTTGCTGAACTTCATGGGGGGGGGGTCATGCACATCACATCAGCCGTGTATAAACCATCTACTAACggtttggctgAGAGAATGGTACAAACATTCAAGAGTGTGTTAAATAGTTCCTCAGAACCTTGGAGTACTGTACTAGACACAtttctcttcaagtaccggattactccacatactACTACCGGTGTATCACCAGTGGAGATGCTTTTCAAGCGTCGTTTCCGCTGTTGTCTCGACTTGTTAAGTCCTAGTGACCTTGTAGCTGGTCGCGTTCAAATTGATGCTGAAATAGCAAACATGGTTGATGTGGTTGCAATAATTGTGGTATTTACAGCCTACATTTTTGTATTTATTTTTGGCTTAATGCTGGTTAGAATTGTCAAGCTAAATGAAGAATGCACTCAGACAGAGAGGGAGCTTGTGGCTGGGCGTAATTTGCCTATTTTTGTGGGAATATGCACAATGACAGCACTAGTTGCACAAACAATTGGGAGTGAATTAAAATTAGTTATggaacaagttgTTAAAATGGTCAATTATACTAAAAGTAGACCTCTTAAATCAAGATTATTTGCTCATATTTTAAAGACATATGAGCGAGCTTTCAAAACCCCATTTTGCACACTGAAGTTTGTTGGCTCAAGCATTGTCGTGTTTTTGAATTGGGGGCTAGGTGGCATTGTATTTGCCAAAAAGATGCGAGCCTGTAAATACTTAAccatgttggatCCATTCTACCAGAAATATGGCATCACCATGGTGGTGCCAATATACTTGGCTGCTTTGTGTGGAGATATTTTATGGTCAGCTTCTATTCTTATGGCTCTAGGTACCAGTCTTGGCATTATGACAGGCATGAATACTCGCCTTGCAACTAGTCTGTCTTCAGCTATAGCCATTATTTACAcagcatgtggCCAAATCCTGGCCGTTGTTTACACAGATATTTTACAGTTGTTTCTCATTGTTGTTGGTTTGGCTGTGTGTAGTCCATTCATTCTATTGGATCATCGAGTAACAAATATCTTAGCTACTCAAAATCAATGGCTTGGCACGTTGGCAGCTGAAGATGTTGGTGTTTGGATAGACTTACTTATTACTATGACATTTGGCACAATTCCCTGGCAGTCATTTTTCCAACGAGTTCTCTCCATGCAGACCGCCGTACAAGCCCAAATGTTATCCATTGCTGGTGCTTTCTTTGCTATTATTCTTGTCATTCCAGCCATAATCATTGGAGCTGCTGGCTCTTCTGCAAATTGGAACCAAACCAGCCTTGGACAGTCTCCAATTGATATAAATGAAAGTTACCTGATGTTGCCATATGTCATCAAAGAATTCACACCAAGAATTCCAAGTTTACTTGGTAATTCTATTGAATTCTCTTTATTTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-