Gene detail

Detailed information of pred2_45935.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_45935.1	CHROMOBOX PROTEIN	Sc3x4tf_132.2	349691	463139	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_45935.1

ATGAGAATCGGACTCGACTACTTTTTATTCAATGCTATCGTCGGTCGCCAGCCTCTCGATGCTGGCTTTTCTGTACCATTTAAGTGGTCGTTTTGTGGAAGTTGTTGTTGTTGGAGGAGGAGGTGGCCGCCATCCGTGACCCGACAACGAAAATCCTCTCGCCGCCGCCACCACCACCGCCGCGTCAACATGGCGGAGGAGAAGGAAGGTGTGACGGCTTCGTCTGAACAGAAAACTAGAGAAATGGACGGCAAAAAGAACTATGGCCGGCGAAAACTACCCTGCGATATGATAAGAGAATCTGAGGAATTCTTCGAGGTGGACAAAATTGTCGGAATGACTAAAATCAATGGCAAGGAACGTTACAAAGTCCGCTGGGTGGGCTATCCTGCCTCAAATGATACATGGGAGCCTAGAGAGAACCTTCTTCCATGCATTGAGATGGTGGAGGACTTTGAACGTGACCGGCAAAGGTTGAAAAAGCGACGGGCTGAACAAAGAAGAATACGAAAAAGCCAGCGCCATGATCCACTGGTAAGTGCTCTTATTTCTGTAGGAATGGGCGAATGTGCAATTAGATGGCTGTGGCTCTTTGTCCTGAATCACCCCAACTATGCCAGGTGGTTGCCCGTGCATATACGTGATATTCTCAGATTAGAAATAGATCATTCATCTCTTTACAAGGAGTTCACTGAGGGTCATTTTGTTGTTCATAAATCATCCAATATGTTCAGTTCAATTGCCATAGATCAGGAGCAAATGAAAGAAAGCACTTCCGAGGTGGCCCTTGGCTGGTTCAGAAGTAGTGAGAATGCTGAAAGAGCTATGATGGAAGGAAGACTTGTTCCAGGGACTAACCTGCCTGATGGCAAAAGTCTATCTACTACTAGTAATAGCTCTCTGACCACTGCCAGCTATGTGAATGCTTCATCTGGGGAGGAGCCCTTGGAAGCGAATGACTCAAGAAATCTTTCATCCATTGGTAATTGTGGGTTGTTGGGACAACCTCCACCTACAACCCTTAAGGATACCTTCTGGAAGGATCTGGAAGAAGGGAAAGTGGACTTATTTGAAACTGATATGTATTCAAAGGTCAAAGCGCAGGGACGAGCATCAAGGCCCAAGTCATTTAAAAATGTTTTCAACAAACAGTCTGAACGCTTACGAGGGAATAATTCCCAGTCCACAAAAAAATCCTCATCAAAAGGGAACCGAAAACAAAATATATTAGCAAAATATTATTCACAACGGCGAATAAGAACTAACCATATACGGAAATCTTCTGATAAAAATCAGTATTCATTTGGACCAAGGACAGAAAATTCTAACCTGGTTAGTAAAAATTGTGACATTAGTTTGACTGACTGTGCAAATAACAATGATTCAATTGTGACAGAGGACTGGGACTATATGGTTAATAGCAAAAGCCCAATGATGAAACCATGTGATCTCAATCGAATGGACTGTGATACTAAATCTAGCATATCTTATTCAACAACAGACAACTGTACAGAACAGTTTATGTATCAACGGAATATTACTGCTCAAATGTCTCAGGGATGTCAACCAAATTCAAAAGACAGTCCACCATCTCTACAACAGCTCCATATGTCCCGAGCCCAAGCTGAAGGAGCAATTGTTGCAATAGCTAAGGATCTTTTTGGTTGGACTCAGTATGGACCATGGAAAGTGTTTGAAAAGAATAAGCCAGCAGGCATGAATACTTTGCCGGCATTATCAAATGTGAGGCGGCTTGAGCCTTATGTTGTAGCAATGATTCTAAGTGCTATTAAAGAACAAAATATATGTTCATTGAATAGTATCATAGTGTACTCAAATGATGGTTCAGCTATGAGTGGTGTTGGCAATTATGTTCAATCAATTACCATTGATGGCAAACAAAGGGCATTGCCGACTCTTGGCATCTTTACCAAATCAAGAAGCAGCTTGGCTGATCTAGAAAAAATAGCTTTAAGTATTCTTTCTGCCTCAATTGGTCACAAATACTCTGAAAAAGAAATCCTTGAGAAAATAAGTTTTGTCATCACAGACAGCACTGCACAGAACTTGGAAGTAATTCAAAAAGTTTGTAATGATCTTGAAGCAGAAGAACAGCCCAAATCTCTGCCGGATGGAAGGGATGAAGAGGAGACGAATGCTCTAGCCGTCTTCCTAAAACGACTGCTGACGACATTTTTGATGCCTCCACAAACCTTACGTTTACAAGTGTCACTCTCGGGTAACTATGATGGACATCCACCTACTCACACTACCGACTGGCCCCAGATTATGGCATTTAAAATTATCACCTCTCTCAGTGATACTTCAAGTCAGAATTGTGACTGTGATAATAAATCCTCACCATCTTCGTCGCCATCCTCAGCATTACGACTTCAGAACTTAAAGGATCCCACTCACTCTCTCGCCAAGAAAAGAAGGACCCGGCTGAAGACGAACAGAAACATAGTTATAAGTTATTCATCAAAACGAAAGAAAACTAAATTTCAGAACATACGTACTTCCCCCAAAAAGACTATGCGGTCAACAATGAATTTGCTACCACCTGAGAAATCCACTTGCAATATATTTGCAATGGGTGAGAGTAGTGTTGACAGCGGAGTATCAAGCCTAAGAACAGAAACTGAAACTGAAATGGATAGCAATTCTCCAGGTCTGGAATCCATTGCATCCACAGTATCTGTTTCCCGTTCAATGACTCCACAGGACCCTGGAAGTGTATGTTTACTTGAAGAAGACCATGTTGATTCTGAATTGTTTTTAATGCCTTTGGAAACCCCTGCAATATCTAGCTGCCAATTGGTGTTACCTTTGTGTGATATTGGTACAGATTTAAAGACTCCGACTGATAAAAGTGGTGTTGACAGTCGGTGTTCTATGAAACTAAAACAGTGTCCGTCAACCCCAGAAACTTGTCCAGAAACAAATTCTGAAATAAAGCAGACTATTCATTTGAATCAGATGAGCGGATATACATTATCTAATCATCCATTTGGTTCTTATAGCAACAATAATAAATCTTCTTTAGGAAATCCTTCTAGGTGGGAAATAAGTGCTCTATTGAAGCTTCAGAATCCCTTGAATTCCATCAGGAATAAAATTGTACGAAATTTTTTTGATAATTGTACAGCAGAAGAATTGGCCAATTTTTGTTCTTGCCACACTCGTCTTGAACGGTCAAGAAATATAGAGAGTTCAGCCCCTACCTCAGTCAAAAAAGCCAGGTTATCTAACAATGTCATCCAAATCAGTAAAGATGAATTTGTTCAAGCTGTATTAGCAGGTGATTATGAGAGGCTAAAATCTGCTCTCAGAGGGGACAGATCACATTATGACCTGGAATCTCCAAACGTTGATGGCTACACTTTGATCATGCAATCAATATTGCGAGGATATAGTGACATAACGTTACTCTTGGCACTTGCTGGTGCTCAACTGGACAAATCGCTGAGTAGTGGAGAGACTGCCCTGATGTTGGCCTGCACAAGGTCCATTTACAGTGGTAACCCTCAGATAGTGAAACTGCTGCTAGACCATGGTGCTAATATTGGGTTCCAGAACACAGACAACTTGAATGTTTTGGATCTGGTCCATGGGAATCTTAGTCTCCAGGGCATGCAAGCAATTTTGACCAGGTTTCATCAGAAGTTTATGAACCAAAAGAGAGACTGTATAAATGCTTGGATGAAAGGAGAACATGAACTTGTGGGAGAAGTTTTTCCCACTCAGTGCATGGCACTTTCAAAAGGCCGAAAAATCCAAATCTGTTTCAGACACTATAAACGAGAATGTGAACGCTATGAGGGCTACCTACTTTTCCTTGTTCATGTCAATGACATAGGGGCACTTCATATTGGATGTCGATTGAAGGGAGAGTCAGTTGTTACGAATGTCTACTTAAATGGAGGATCAGAAAAACAAGTTTCATTGCCATCAAAATTTGTGACATCGTTCAGGAATCTCAAGCATGGTGATAACACACTGCTAATTGAAACCAAACCAGATGCAAGGCTATCAGATGGTAATGTTACACTTTCCAATCTTAAAATCCCTGCAAGACGCATGCGTTTCATGTTG

Transcript

pred2_45935.1

ATGAGAATCGGACTCGACTACTTTTTATTCAATGCTATCGTCGGTCGCCAGCCTCTCGATGCTGGCTTTTCTGTACCATTTAAGTGGTCGTTTTGTGGAAGTTGTTGTTGTTGGAGGAGGAGGTGGCCGCCATCCGTGACCCGACAACGAAAATCCTCTCGCCGCCGCCACCACCACCGCCGCGTCAACATGGCGGAGGAGAAGGAAGGTGTGACGGCTTCGTCTGAACAGAAAACTAGAGAAATGGACGGCAAAAAGAACTATGGCCGGCGAAAACTACCCTGCGATATGATAAGAGAATCTGAGGAATTCTTCGAGGTGGACAAAATTGTCGGAATGACTAAAATCAATGGCAAGGAACGTTACAAAGTCCGCTGGGTGGGCTATCCTGCCTCAAATGATACATGGGAGCCTAGAGAGAACCTTCTTCCATGCATTGAGATGGTGGAGGACTTTGAACGTGACCGGCAAAGGTTGAAAAAGCGACGGGCTGAACAAAGAAGAATACGAAAAAGCCAGCGCCATGATCCACTGGTAAGTGCTCTTATTTCTGTAGGAATGGGCGAATGTGCAATTAGATGGCTGTGGCTCTTTGTCCTGAATCACCCCAACTATGCCAGGTGGTTGCCCGTGCATATACGTGATATTCTCAGATTAGAAATAGATCATTCATCTCTTTACAAGGAGTTCACTGAGGGTCATTTTGTTgttcataaatCATCCAATATGTTCAGTTCAATTGCCATAGATCAGGAGCAAATGAAAGAAAGCACTTCCGAGGTGGCCCTTGGCTGGTTCAGAAGTAGTGAGAATGCTGAAAGAGCTATGATGGAAGGAAGACTTGTTCCAGGGACTAACCTGCCTGATGGCAAAAGTCTATCTACTACTAGTAATAGCTCTCTGACCACTGCCAGCTATGTGAATGCTTCATCTGGGGAGGAGCCCTTGGAAGCGAATGACTCAAGAAATCTTTCATCCATTGGTAATTGTGGGTTGTTGGGACAACCTCCACCTACAACCCTTAAGGATACCTTCTGGAAGGATCTGGAAGAAGGGAAAGTGGACTTATTTGAAACTGATATGTATTCAAAGGTCAAAGCGCAGGGACGAGCATCAAGGCCCAAGTCATTTAAAAATGTTTTCAACAAACAGTCTGAACGCTTACGAGGGAATAATTCCCAGTCCACAAAAAAATCCTCATCAAAAGGGAACCGAAAACAAAATATATTAGCAAAATATTATTCACAACGGCGAATAAGAACTAACCATATACGGAAATCTTCTGATAAAAATCAGTATTCATTTGGACCAAGGACAGAAAATTCTAACCTGGTTAGTAAAAATTGTGACATTAGTTTGACTGACTGTGCAAATAACAATGATTCAATTGTGACAGAGGACTGGGACTATATGGTTAATAGCAAAAGCCCAATGATGAAACCATGTGATCTCAATCGAATGGACTGTGATACTAAATCTAGCATATCTTATTCAACAACAGACAACTGTACAGAACAGTTTATGTATCAACGGAATATTACTGCTCAAATGTCTCAGGGATGTCAACCAAATTCAAAAGACAGTCCACCATCTCTACAACAGCTCCATATGTCCCGAGCCCAAGCTGAAGGAGCAATTGTTGCAATAGCTAAGGATCTTTTTGGTTGGACTCAGTATGGACCATGGAAAGTGTTTGAAAAGAATAAGCCAGCAGGCATGAATACTTTGCCGGCATTATCAAATGTGAGGCGGCTTGAGCCTTATGTTGTAGCAATGATTCTAAGTGCTATTAAAGAACAAAATATATGTTCATTGAATAGTATCATAGTGTACTCAAATGATGGTTCAGCTATGAGTGGTGTTGGCAATTATGTTCAATCAATTACCATTGATGGCAAACAAAGGGCATTGCCGACTCTTGGCATCTTTACCAAATCAAGAAGCAGCTTGGCTGATCTAGAAAAAATAGCTTTAAGTATTCTTTCTGCCTCAATTGGTCACAAATACTCTGAAAAAGAAATCCTTGAGAAAATAAGTTTTGTCATCACAGACAGCACTGCACAGAACTTGGAAGTAATTCAAAAAGTTTGTAATGATCTTGAAGCAGAAGAACAGCCCAAATCTCTGCCGGATGGAAGGGATGAAGAGGAGACGAATGCTCTAGCCGTCTTCCTAAAACGACTGCTGACGACATTTTTGATGCCTCCACAAACCTTACGTTTACAAGTGTCACTCTCGGGTAACTATGATGGACATCCACCTACTCACACTACCGACTGGCCCCAGATTATGGCATTTAAAATTATCACCTCTCTCAGTGATACTTCAAGTCAGAATTGTGACTGTGATAATAAATCCTCACCATCTTCGTCGCCATCCTCAGCATTACGACTTCAGAACTTAAAGGATCCCACTCACTCTCTCGCCAAGAAAAGAAGGACCCGGCTGAAGACGAACAGAAACATAGTTATAAGTTATTCATCAAAACGAAAGAAAACTAAATTTCAGAACATACGTACTTCCCCCAAAAAGACTATGCGGTCAACAATGAATTTGCTACCACCTGAGAAATCCACTTGCAATATATTTGCAATGGGTGAGAGTAGTGTTGACAGCGGAGTATCAAGCCTAAGAACAGAAACTGAAACTGAAATGGATAGCAATTCTCCAGGTCTGGAATCCATTGCATCCACAGTATCTGTTTCCCGTTCAATGACTCCACAGGACCCTGGAAGTGTATGTTTACTTGAAGAAGACCATGTTGATTCTGAATTGTTTTTAATGCCTTTGGAAACCCCTGCAATATCTAGCTGCCAATTGGTGTTACCTTTGTGTGATATTGGTACAGATTTAAAGACTCCGACTGATAAAAGTGGTGTTGACAGTCGGTGTTCTATGAAACTAAAACAGTGTCCGTCAACCCCAGAAACTTGTCCAGAAACAAATTCTGAAATAAAGCAGACTATTCATTTGAATCAGATGAGCGGATATACATTATCTAATCATCCATTTGGTTCTTATAGCAACAATAATAAATCTTCTTTAGGAAATCCTTCTAGGTGGGAAATAAGTGCTCTATTGAAGCTTCAGAATCCCTTGAATTCCATCAGGAATAAAATTGTACGAAATTTTTTTGATAATTGTACAGCAGAAGAATTGGCCAATTTTTGTTCTTGCCACACTCGTCTTGAACGGTCAAGAAATATAGAGAGTTCAGCCCCTACCTCAGTCAAAAAAGCCAGGTTATCTAACAATGTCATCCAAATCAGTAAAGATGAATTTGTTCAAGCTGTATTAGCAGGTGATTATGAGAGGCTAAAATCTGCTCTCAGAGGGGACAGATCACATTATGACCTGGAATCTCCAAACGTTGATGGCTACACTTTGATCATGCAATCAATATTGCGAGGATATAGTGACATAACGTTACTCTTGGCACTTGCTGGTGCTCAACTGGACAAATCGCTGAGTAGTGGAGAGACTGCCCTGATGTTGGCCTGCACAAGGTCCATTTACAGTGGTAACCCTCAGATAGTGAAACTGCTGCTAGACCATGGTGCTAATATTGGGTTCCAGAACACAGACAACTTGAATGTTTTGGATCTGGTCCATGGGAATCTTAGTCTCCAGGGCATGCAAGCAATTTTGACCAGGTTTCATCAGAAGTTTATGAACCAAAAGAGAGACTGTATAAATGCTTGGATGAAAGGAGAACATGAACTTGTGGGAGAAGTTTTTCCCACTCAGTGCATGGCACTTTCAAAAGGCCGAAAAATCCAAATCTGTTTCAGACACTATAAACGAGAATGTGAACGCTATGAGGGCTACCTACTTTTCCTTGTTCATGTCAATGACATAGGGGCACTTCATATTGGATGTCGATTGAAGGGAGAGTCAGTTGTTACGAATGTCTACTTAAATGGAGGATCAGAAAAACAAGTTTCATTGCCATCAAAATTTGTGACATCGTTCAGGAATCTCAAGCATGGTGATAACACACTGCTAATTGAAACCAAACCAGATGCAAGGCTATCAGATGGTAATGTTACACTTTCCAATCTTAAAATCCCTGCAAGACGCATGCGTTTCATGTTGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051219	Family	Heterochromatin-associated chromo domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22812	CHROMOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006325	Biological Process	chromatin organization	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-