Gene detail

Detailed information of pred2_45309.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_45309.1	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	Sc3x4tf_18.2	4458155	4410456	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_45309.1

ATGAAACGCCGTCTAGATTTCGCGCGCAATTTTAATTCTGATCTGAAAATGGCGCCACCTGAACGTGACGATGCTGCTGATACTTCATCTGGCCGTACAAAAAGAGAGAAAGTCGATAAATTTGGTCGTTTTGCAGCTTTTGCCAAGTTGAAAAAAACCAAAGAATCTGGAGAAAAGCATAAATATCAGCTTGAAGAAGAAACAGCTGTTTATGATGTTGTTGACGAAGATGAGTACTCTGAGATGGTACGTCAACGACGAGAGGAAGATTGGATTGTTGATGATAATGGAGTTGGTTACGTGGAAGATGGCCGTGAAATCTTTGATGATGACCTTGCTGATGATGCTTTTAACCAAGTTTCCAAAGGCAAAAAATCAGACAAGAAGAATCCAAACATCCACCATCCTGATAGAAAACCCAAAAAGAACATCCGTAACATGTTTATGGACATGTCCACTAAGAAAAAAAAGGAGAAAGACATTAGTGTTCAAGAAGATGATCTCCTTTCTGATATCATGGGTGAAATTCACCAAGGTCCTACCAACCTGCATTTGGGATCTTTCAAAAAATCTACCCCGGTCTCAACTGGAAAGAAGAAGGTTAACCGAAACCCCTTCAGTGTAAGCACTACGACTCCGACCAAACCAAAACCTTCTTTGAAGCCACGAAATATCATTGCTACAAGAGAAAAAAATGAAGATGATGCAGTTCTCCCAGCAGCCAAAAAGCCGAGACGGGAAAGGCCCGAAGAAGATATTGAATACACAGCCATCCCGATTGGGAAGTTAGAGCAGGGAGATGTTAAAGAAAAAGATGACGAAAAAGAAAATATATCCGAGACAGAAATGAATGACATTGAGGAGAATGATGCAGACAAAACTGACATGGACCTTACTGATATTAACTTTGATGAAGATGTTGAAGAAGGTGAAGAAGAAAATACTGAAACAAAAATAGCTGTAGAATGTCTGGAAAGTGGTTGGGAAACAGTAAGTAAAACCAAGGATGACACTCCTGATGAACCAACTGTTGTTGATATGCAAGTTGATGCCTCCCAGTTGCCTCTGATCACCAACCAAAATGGTGACCAGGTTCTCAGATTCTATTGGTTGGATGCTTATGAAGATTTTTTCAATCAAAAAGGCATTGTTTACCTTTTTGGTAAAGTTTGGTTTGAAAGTGTGAAGAGCTTTGTAAGCTGTTGTGTGAGTGTCAAGAACATTGAACGAAGAATACGTATTTTGCCCAGAGCAGCAAGGCTGAATGCGAAAACAGGGATTGAGGATGGCCCACCTGTGAAACTAGCTGATGTTTATGAAGAATTTAGTGAGAAGATTGCTGAAAAATACAAGATCCCAACTCATAAATCCAGGAAATTGACATGCAAGTATGCTTTTGAACTGGAAGGAATTCCTGCAGAATCAGATTATCTGGAAGTTAGATATTCAGCTACAGTAATGAATTTGCTGGATCTCAGTATTGTTAAAGAACACTTACCAATTCCTCCCCTGGTTGTAATGACCCTCAACTTAAGGACTTTACCAAATCCAAAGACCCATCAAAATGAGGTAATAGCGGCTGCTTATTTGGTCAACAATGCTTTAGCTATTGACAAGCCCCCACCAACAAAAAACCTATTCCATCAAGATTGGTGTGCCATCAGCAAACCAACTGACTGTATATTCCCATTTGACTTTAAGGACAAGTTGCAGCAGAACAAAAGTATGAAAGTGGAAATCACTTCAACTGAGCGAGCATTGCTTGGTTTTTTGCTGGCCAAAATTCACAAAGTTGATCCAGATGTGATAGTTGGCCATGACATTTATGGTTTTGATATTGACATTCTTCTGAATCGAATAAGTGCCAACAAAATTCCCCACTGGTCGAAGATCGGACGTTTAAAGCGATCAATGATTCCCAAATTATCTGGAGGCAGAGGAACCTCTGCTGAAAAGGCTGCTGCCTGTGGCCGACTAATCTGTGATGTGAAAATCTCGGCCAATGAGCTTGTGCACTTGAAGAGCTATGATCTTTCGGAATTGGTTCAGCAGATATTGAAGGCAAAGAGGATCAGTGTGGATCAGGATCATATCAGGGACATGTACAACTCTTCTGCTAACTTGATGAAGCTGATTGAATTTACTTTGATGGACTGTTCGCATATTTTACGTATCATGTATGAACTCAATGTGTTACCATTGGCTCTCCAGATTACCTCTATTTGTGGAAATGTTGTGTCTCGGACATTGATGGGAGGCCGAGCTGAGAGAAATGAGTATCTCCTTCTCCACGCCTTCACTGAAAAAGATTATATCGTGCCAGATAAGCAATTCAAGAAGAAGGCAGCTCCAGTGGTTGAATTTGATGATGATGGAGATCCAATATCTGATAAAAAATCTGCAGGTCGCAAAAAACCTGCTTATGCGGGAGGGTTGGTATTGGAACCGAAGAAAGGGTTTTATGACAAATACATCTTATTGCTGGATTTCAACAGTTTGTATCCTTCCATCATCCAAGAATACAATATTTGCTTCACTACAGTTGTGCGACAGTATTCAAAGAAGGACAATAATGAGGAAGATTTTCATGTAGAACTACCAGAATCTGGACTTGAACCTGGAGTCCTTCCTACTGAAATCCGGAAACTCGTTGAAAGTCGCAAACAAGTGAAGACTTTGATGCAACAGAAACATCTTTCTTCTGAACAAAAGATGCAGGGAATT

Transcript

pred2_45309.1

ATGAAACGCCGTCTAGATTTCGCGCGCAATTTTAATTCTGATCTGAAAATGGCGCCACCTGAACGTGACGATGCTGCTGATACTTCATCTGGCCGTACAAAAAGAGAGAAAGTCGATAAATTTGGTCGTTTTGCAGCTTTTGCCAAGTTGAAAAAAACCAAAGAATCTGGAGAAAAGCATAAATATCAGCTTGAAGAAGAAACAGCTGTTTATGATGTTGTTGACGAAGATGAGTACTCTGAGATGGTACGTCAACGACGAGAGGAAGATTGGATTGTTGATGATAATGGAGTTGGTTACGTGGAAGATGGCCGTGAAATCTTTGATGATGACCTTGCTGATGATGCTTTTAACCAAGTTTCCAAAGGCAAAAAATCAGACAAGAAGAATCCAAACATCCACCATCCTGATAGAAAACCCAAAAAGAACATCCGTAACATGTTTATGGACATGTCCACTAAGAAAAAAAAGGAGAAAGACATTAGTGTTCAAGAAGATGATCTCCTTTCTGATATCATGGGTGAAATTCACCAAGGTCCTACCAACCTGCATTTGGGATCTTTCAAAAAATCTACCCCGGTCTCAACTGGAAAGAAGAAGGTTAACCGAAACCCCTTCAGTGTAAGCACTACGACTCCGACCAAACCAAAACCTTCTTTGAAGCCACGAAATATCATTGCTACAAGAGAAAAAAATGAAGATGATGCAGTTCTCCCAGCAGCCAAAAAGCCGAGACGGGAAAGGCCCGAAGAAGATATTGAATACACAGCCATCCCGATTGGGAAGTTAGAGCAGGGAGATGTTAAAGAAAAAGATGACGAAAAAGAAAATATATCCGAGACAGAAATGAATGACATTGAGGAGAATGATGCAGACAAAACTGACATGGACCTTACTGATATTAACTTTGATGAAGATGTTGAAGAAGGTGAAGAAGAAAATACTGAAACAAAAATAGCTGTAGAATGTCTGGAAAGTGGTTGGGAAACAGTAAGTAAAACCAAGGATGACACTCCTGATGAACCAACTGTTGTTGATATGCAAGTTGATGCCTCCCAGTTGCCTCTGATCACCAACCAAAATGGTGACCAGGTTCTCAGATTCTATTGGTTGGATGCTTATGAAGATTTTTTCAATCAAAAAGGCATTGTTTACCTTTTTGGTAAAGTTTGGTTTGAAAGTGTGAAGAGCTTTGTAAGCTGTTGTGTGAGTGTCAAGAACATTGAACGAAGAATACGTATTTTGCCCAGAGCAGCAAGGCTGAATGCGAAAACAGGGATTGAGGATGGCCCACCTGTGAAACTAGCTGATGTTTATGAAGAATTTAGTGAGAAGATTGCTGAAAAATACAAGATCCCAACTCATAAATCCAGGAAATTGACATGCAAGTATGCTTTTGAACTGGAAGGAATTCCTGCAGAATCAGATTATCTGGAAGTTAGATATTCAGCTACAGTAATGAATTTGCTGGATCTCAGTATTGTTAAAGAACACTTACCAATTCCTCCCCTGGTTGTAATGACCCTCAACTTAAGGACTTTACCAAATCCAAAGACCCATCAAAATGAGGTAATAGCGGCTGCTTATTTGGTCAACAATGCTTTAGCTATTGACAAGCCCCCACCAACAAAAAACCTATTCCATCAAGATTGGTGTGCCATCAGCAAACCAACTGACTGTATATTCCCATTTGACTTTAAGGACAAGTTGCAGCAGAACAAAAGTATGAAAGTGGAAATCACTTCAACTGAGCGAGCATTGCTTGGTTTTTTGCTGGCCAAAATTCACAAAGTTGATCCAGATGTGATAGTTGGCCATGACATTTATGGTTTTGATATTGACATTCTTCTGAATCGAATAAGTGCCAACAAAATTCCCCACTGGTCGAAGATCGGACGTTTAAAGCGATCAATGATTCCCAAATTATCTGGAGGCAGAGGAACCTCTGCTGAAAAGGCTGCTGCCTGTGGCCGACTAATCTGTGATGTGAAAATCTCGGCCAATGAGCTTGTGCACTTGAAGAGCTATGATCTTTCGGAATTGGTTCAGCAGATATTGAAGGCAAAGAGGATCAGTGTGGATCAGGATCATATCAGGGACATGTACAActcttctgctaacttgatgaagcTGATTGAATTTACTTTGATGGACTGTTCGCATATTTTACGTATCATGTATGAACTCAATGTGTTACCATTGGCTCTCCAGATTACCTCTATTTGTGGAAATGTTGTGTCTCGGACATTGATGGGAGGCCGAGCTGAGAGAAATGAGTATCTCCTTCTCCACGCCTTCACTGAAAAAGATTATATCGTGCCAGATAAgcaattcaagAAGAAGGCAGCTCCAGTGGTTGAATTTGATGATGATGGAGATCCAATATCTGATAAAAAATCTGCAGGTCGCAAAAAACCTGCTTATGCGGGAGGGTTGGTATTGGAACCGAAGAAAGGGTTTTATGACAAATACATCTTATTGCTGGATTTCAACAGTTTGTATCCTTCCATCATCCAAGAATACAATATTTGCTTCACTACAGTTGTGCGACAGTATTCAAAGAAGGACAATAATGAGGAAGATTTTCATGTAGAACTACCAGAATCTGGACTTGAACCTGGAGTCCTTCCTACTGAAATCCGGAAACTCGTTGAAAGTCGCAAACAAGTGAAGACTTTGATGCAACAGAAACATCTTTCTTCTGAACAAAAGATGCAGGGAATTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00136	DNA_pol_B	DNA polymerase family B	Family	Interproscan
PF03104	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF12254	DNA_pol_alpha_N	DNA polymerase alpha subunit p180 N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006133	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR006134	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR024647	Domain	DNA polymerase alpha catalytic subunit, N-terminal domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45861	DNA POLYMERASE ALPHA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005658	Cellular Component	alpha DNA polymerase:primase complex	Interproscan
GO:0006272	Biological Process	leading strand elongation	Interproscan
GO:0006273	Biological Process	lagging strand elongation	Interproscan
GO:1902975	Biological Process	mitotic DNA replication initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-