Gene detail

Detailed information of pred2_45175.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_45175.1	PELOTA	Sc3x4tf_183	1311942	1370664	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_45175.1

ATGCAAACACTTATTCCTATAATAAAGGATTTAATTTTGCCTGGCACAACAGTTGTTTCAGATTGTTGGAGGACGTATGATCGTCTCAGTGAAGAAGGCTATAACCATCTTAGGGTCAAACATTCAGTGAATTTCATCAATCCTGAAACACATGCAATTACAATGCATCATTTCCGTGGACCTGACAGCCAATCAGAGTGCTCCATTCACGGAGTTTCAGAGATGGAGATTCAAAATGAACTCAGTTCAGATGAAAAGTACCAATTCATCACGAGAAACCTACAGGAAGTTCTTGGAGAAGATAAACTGAAAACAATCTTAAAGGAGCGTGATGTAAAAATCTACTGGGGAACAGCCACAACGGGCAAGCCACATGTGGCTTACTTTGTACCCATGACAAAGATAGCAGACTTCCTCAGAGCTGGATGTGAAGTGACCATTCTGTTTGCCGACCTCCATGCCTATCTGGACAACATGAAGGCTCCTTGGGAACTCTTGAAGCAACGTGTGAAATATTATGAAACTGTAATTAAGGCAATGCTGAAATCTTTAGGCGTCCCATTGGAGAAGCTCAAGTTTATACAAGGAACAGAATTCCAACTTAGCAGGCAAGTGGAATATACATTAGATGTTTATAAAATGTCATCCATGGTCACTGATCATGATGCTCGCAAGGCTGGTGCTGAAGTGGTCAAACAGGTGGAACATCCGTTATTAAGTGGTTTGCTCTACCCTGGACTACAGGCCTTGGATGAAGAATATTTGAAGGTAGATGCACAATTTGGTGGAGTTGATCAAAGAAAAATCTTCACATTTGCAGAAAAGTACCTACCACACTTAGGATATGCCAAGAGGGCTCATTTAATGAATCCAATGGTGCCTGGTTTGACTGGAGCCAAAATGAGTTCTTCAGAAGAAGATTCCAAAATCGATCTGCTTGATTCAGCAGCACAAGTGAAAAAGAAATTGAAACGAGCTTTCTGTGAACCTGGCAACGTCAAGGACAATGGTATTCTGGCATTCTGTCAACATGTCATCTTCCAATTACCAGTGGTTAAAGATGGTTTTGAAATAAAAAGGGCAGAAGATAATGGTGGAGATGTGGTCTACCAGACCTATACAGAATTGGAAGAAGCCTTTCTCAAAGAGGAACTCCATCCCGGAGACTTGAAAAGTGCCATGGAGGGATACCTCAATCAATTGTTGGATCCAATCCGGAAAGAATTTGAAAGTCCTGAGAATAAAAAACTAACAGCTGCTGCCTATCCTCCAATTAAGAAGTCAGCACCTGGAGAAGAAATTACTCCAGCCCGTCTTGATTTACGTGTGGGAAAAATCTTATCTGTGGAAAAGCACCCTGATGCTGATAGTCTGTACATTGAAAAAGTTGACCTTGGAGAGCCTGCACCTCGGACAGTGGTCAGTGGTTTGGCTGGTCTCGTTCCAATGGAAGAACTTGAGGGTCGGATGGGTGTGTTTCTTTGTAACCTGAAAGCCCAGAAGATGCGAGGAGTTGAATCTCAAGCTATGCTTATGTGTGCCTCTATAGAAGACCCCCGTGCAGTAGAACCTTTATTGCCCCCAGAAAATTCCTCTGAAGGGGAAACCGTATTCATTGAGAGTTACCAAGGAAAACCTGATGATGAACTCAAACCTAAGAAGAAAATCTGGGAAAAATTGCAGCCTGACTTCAAGGTGAATGCAAATGGTGTTGCAGAATGGAGTGGTTGTTCAATGATGACCGAATTAGGCAATGTAACAGCTCCTACAATGGTGAATGCTCCTATCAAAGCTGTTACCCTCACTCCCGAGGAAGCAGAGGACATGTGGCATGCCTACAATCTTGTGGCTGTAGGTGACACACTCAAGTCCACCACCATCAGGAAAGTTCAGAATGAATCCTCTACAGGTAGTGTGAGTGCCAGCAAAGTGCGGACGGTACTTACTATTTCTGTTGAGACTATAGATTTTGATACACAAGCCTGTGTTCTCCGAGTTAAAGGTAGAAATATCCAGGAGAACCAGTATGTCAAGATGGGAGCTTATCACACACTTGACTTGGAACTTAATCGAAAGTTTACTCTTGTCAAACGTTGGGATACTGTGACATTGCAACGAATTGATGCTGCCTGTGATCCAGCCCAAAGTGCCGACCTTGCAGCTGTAGTGATGCAAGAAGGTCTCGGCCATGTCTGTTTGGTTACTTCACATATGACCTTGGTGAGGGCCAAAATAGAAACAAACATCCCTCGGAAAAGGAAAGGCATGTGTTCTCAACATGATAAGGACCAGTTTTACACTTATATGTTTGATCAAGCAGTCAAAAATGACTGGAAAACTCTTCTAGAAAACAAAGCTAGATTTGTACTTATCCATTCCTCGTCAGGTTTTAAACATTCACTGAAAGAAGTGTTGCAGGACCCAACTGTGGCTGCTCGTCTGGCTGACACAAAAGCCCTGGGTGAAGTTAAAGCTCTAGATGACTTTTACGGTTTGTTGTTGAATGATCCAGATCGTGCAGTTTATGGATTAAAACATGTTGAAAAAGCTGCAGACCTACAGGCCATTGAGACCCTAATGGTATCTGATGAATTATTTAGGTCAAGTGATATAAAGAAACGTGCACGCTACGTAGCTCTTGTGGATAAAGTAAAAGACAATGGAAGTGAAGTAAAAATATTTTCCAGTCTTCATGTGTCTGGTGAACAACTTGGGCAATTGACCGGTGTAGCAGCAATGCTAAGATATCCTGTTCCTGACGAAGATGAGTATGATGATGAAGAGACG

Transcript

pred2_45175.1

ATGCAAACACTTATTCCTATAATAAAGGATTTAATTTTGCCTGGCACAACAGTTGTTTCAGATTGTTGGAGGACGTATGATCGTCTCAGTGAAGAAGGCTATAACCATCTTAGGGTCaaacattcagtGAATTTCATCAATCCTGAAACACATGCAATTACAATGCATCATTTCCGTGGACCTGACAGCCAATCAGAGTGCTCCATTCACGGAGTTTCAGAGATGGAGATTCAAAATGAACTCAGTTCAGATGAAAAGTACCAATTCATCACGAGAAACCTACAGGAAGTTCTTGGAGAAGATAAACTGAAAACAATCTTAAAGGAGCGTGATGTAAAAATCTACTGGGGAACAGCCACAACGGGCAAGCCACATGTGGCTTACTTTGTACCCATGACAAAGATAGCAGACTTCCTCAGAGCTGGATGTGAAGTGACCATTCTGTTTGCCGACCTCCATGCCTATCTGGACAACATGAAGGCTCCTTGGGAACTCTTGAAGCAACGTGTGAAATATTATGAAACTGTAATTAAGGCAATGCTGAAATCTTTAGGCGTCCCATTGGAGAAGCTCAAGTTTATACAAGGAACAGAATTCCAACTTAGCAGGCAAGTGGAATATACATTAGATGTTTATAAAATGTCATCCATGGTCACTGATCATGATGCTCGCAAGGCTGGTGCTGAAGTGGTCAAACAGGTGGAACATCCGTTATTAAGTGGTTTGCTCTACCCTGGACTACAGGCCTTGGATGAAGAATATTTGAAGGTAGATGCACAATTTGGTGGAGTTGATCAAAGAAAAATCTTCACATTTGCAGAAAAGTACCTACCACACTTAGGATATGCCAAGAGGGCTCATTTAATGAATCCAATGGTGCCTGGTTTGACTGGAGCCAAAATGAGTTCTTCAGAAGAAGATTCCAAAATCGATCTGCTTGATTCAGCAGCACAAGTGAAAAAGAAATTGAAACGAGCTTTCTGTGAACCTGGCAACGTCAAGGACAATGGTATTCTGGCATTCTGTCAACATGTCATCTTCCAATTACCAGTGGTTAAAGATGGTTTTGAAATAAAAAGGGCAGAAGATAATGGTGGAGATGTGGTCTACCAGACCTATACAGAATTGGAAGAAGCCTTTCTCAAAGAGGAACTCCATCCCGGAGACTTGAAAAGTGCCATGGAGGGATACCTCAATCAATTGTTGGATCCAATCCGGAAAGAATTTGAAAGTCCTGAGAATAAAAAACTAACAGCTGCTGCCTATCCTCCAATTAAGAAGTCAGCACCTGGAGAAGAAATTACTCCAGCCCGTCTTGATTTACGTGTGGGAAAAATCTTATCTGTGGAAAAGcaccCTGATGCTGATAGTCTGTACATTGAAAAAGTTGACCTTGGAGAGCCTGCACCTCGGACAGTGGTCAGTGGTTTGGCTGGTCTCGTTCCAATGGAAGAACTTGAGGGTCGGATGGGTGTGTTTCTTTGTAACCTGAAAGCCCAGAAGATGCGAGGAGTTGAATCTCAAGCTATGCTTATGTGTGCCTCTATAGAAGACCCCCGTGCAGTAGAACCTTTATTGCCCCCAGAAAATTCCTCTGAAGGGGAAACCGTATTCATTGAGAGTTACCAAGGAAAACCTGATGATGAACTCAAACCTAAGAAGAAAATCTGGGAAAAATTGCAGCCTGACTTCAAGGTGAATGCAAATGGTGTTGCAGAATGGAGTGGTTGTTCAATGATGACCGAATTAGGCAATGTAACAGCTCCTACAATGGTGAATGCTCCTATCAAAGCTGTTACCCTCACTCCCGAGGAAGCAGAGGACATGTGGCATGCCTACAATCTTGTGGCTGTAGGTGACACACTCAAGTCCACCACCATCAGGAAAGTTCAGAATGAATCCTCTACAGGTAGTGTGAGTGCCAGCAAAGTGCGGACGGTACTTACTATTTCTGTTGAGACTATAGATTTTGATACACAAGCCTGTGTTCTCCGAGTTAAAGGTAGAAATATCCAGGAGAACCAGTATGTCAAGATGGGAGCTTATCACACACTTGACTTGGAACTTAATCGAAAGTTTACTCTTGTCAAACGTTGGGATACTGTGACATTGCAACGAATTGATGCTGCCTGTGATCCAGCCCAAAGTGCCGACCTTGCAGCTGTAGTGATGCAAGAAGGTCTCGGCCATGTCTGTTTGGTTACTTCACATATGACCTTGGTGAGGGCCAAAATAGAAACAAACATCCCTCGGAAAAGGAAAGGCATGTGTTCTCAACATGATAAGGACCAGTTTTACACTTATATGTTTGATCAAGCAGTCAAAAATGACTGGAAAACTCTTCTAGAAAACAAAGCTAGATTTGTACTTATCCATTCCTCGTCAGGTTTTAAACATTCACTGAAAGAAGTGTTGCAGGACCCAACTGTGGCTGCTCGTCTGGCTGACACAAAAGCCCTGGGTGAAGTTAAAGCTCTAGATGACTTTTACGGTTTGTTGTTGAATGATCCAGATCGTGCAGTTTATGGATTAAAACATGTTGAAAAAGCTGCAGACCTACAGGCCATTGAGACCCTAATGGTATCTGATGAATTATTTAGGTCAAGTGATATAAAGAAACGTGCACGCTACGTAGCTCTTGTGGATAAAGTAAAAGACAATGGAAGTGAAGTAAAAATATTTTCCAGTCTTCATGTGTCTGGTGAACAACTTGGGCAATTGACCGGTGTAGCAGCAATGCTAAGATATCCTGTTCCTGACGAAGATGAGTATGATGATGAAGAGACGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan
PF03463	eRF1_1	eRF1 domain 1	Domain	Interproscan
PF03464	eRF1_2	eRF1 domain 2	Domain	Interproscan
PF03465	eRF1_3	eRF1 domain 3	Domain	Interproscan
PF12762	DDE_Tnp_IS1595	ISXO2-like transposase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002307	Family	Tyrosine-tRNA ligase	Interproscan
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR004405	Family	Translation release factor pelota	Interproscan
IPR005140	Domain	eRF1 domain 1/Pelota-like	Interproscan
IPR005141	Domain	eRF1 domain 2	Interproscan
IPR005142	Domain	eRF1 domain 3	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR024445	Domain	ISXO2-like transposase domain	Interproscan
IPR029064	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR038069	Homologous_superfamily	Pelota/DOM34, N-terminal domain	Interproscan
IPR042226	Homologous_superfamily	eRF1, domain 2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10853	PELOTA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004831	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006437	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan
GO:0032790	Biological Process	ribosome disassembly	Interproscan
GO:0070481	Biological Process	nuclear-transcribed mRNA catabolic process, non-stop decay	Interproscan
GO:0070651	Biological Process	nonfunctional rRNA decay	Interproscan
GO:0070966	Biological Process	nuclear-transcribed mRNA catabolic process, no-go decay	Interproscan
GO:0071025	Biological Process	RNA surveillance	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-