Gene detail

Detailed information of pred2_43055.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_43055.1	KU AUTOANTIGEN DNA HELICASE	Sc3x4tf_260.1	3047319	3094122	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_43055.1

ATGGTACGATGTGTAGATGGGACGAATTATGACTACCCGTTAATCCGGATCATTGTACCGGGGGAAGCAGTTGTTCTCGTCTTGGATGTCAGTCCATCCATGTGCGATGATGCTCCACCTGGCCAGGATTCTCCACTGCAGTCCGCACTGGATGCTATTACAATGATTGTACAGCGCAAGATATTTTCTGAATCCAAAGATGAAATTGGATTGGTGTTGTTTGGCACAGTCGAAACAGACAACCCCTTGGCATCTGCGGATGACGATGAGGACAATTCTTATAGGAATGTCTCAGTCGTGCGGCGTCTTGATGTGGCCAATTTTGATTTCCTGGATTTAATCACCAAGTACACTCACTCGAAGACAACATCTGCAGATTATATTGATGCTTTGATTGTTGCAATGGACCATTTACAGAGTGCTTTGGAAAACAAGAAAGGTTTTAAAAACAAGCAGGTGATATTGCTGTCCAATTTTGATAATCCATTTGAAGATGATCAACTGAACCACATCATTGCTGGGATGAAGAATCAAGGAACAGAACTGAATGTCATTGGTCCTGACCTCGATTATGAAGTCAATGAGGAGGATGGTTCTGGTGATACCCTGACAAATGGTATCAAGAAAGAAAAGACCAAACAACAAAGAGCAGGAGAAGCCGTCGTGAAGAGAATGCTCAAAGAGACCAATGGAAATTCTTATTCTTTTGGAGAGGCACTGTCGATGTTGAGTCACTTTACTTCTAGGCAAACAACTCCAACTGCATGGAAGTGTGATTTGGAGATTGGAGATCTCATAACAATTCCTATACATGGTTATATCAAGCTGAAATCCCATGAACTTAAACAATCCTGGAAAAAAGTTTACAATAAAGACCCCGAGGCAACTTTCAGGATAGCCAAAACATTCCACCTAAACGATGAGCAGGAGACGGAAATTGGTATTGATGAAACTGTTGATGGTTTTCGTTACGGATCTACTTTGGTGCCGATGACTGACAAAGACAAAAACGAAATGAAATACAAATCTGAAAAATGTTTCAAAGTTCTTGGCTTTACCCGTGCTGACAATGTGATGACGGTCATGTTGTCTGCATTGATCAATGCATTGTACGAGACAAACACAGTCTCCATTGTGAGACGTGTTTACAGATCAAATTCAGCCCCGAAAGTCGGATGTCTTGCTCCCCATATTAAGACCAACTATGAGGTAAATCTTCATTTAGTCCAGCGGTTCTCAGAGTCCCAGTGTTTAATGTACCATGAACTGCCTTTTAGTGAAGATGTACGTTCATACACATTTGCATCCCTGCCAATGGACAATGATGATGGTCCTGCCAAAAAGAAATTTAAACCATCTGGTAAATGCCTCCAACACAGAGCCCTTAATCCGCAGGAACCACTTCCAGAGTTGTCTCCCCTGATGGCCCGGCAACTAGATATCCCCACAAATATTGCCAATGCTTGCAAATCCAGTGTGGACGCCATCAAAAACAAATTCAAGTTAGAATTAATTCAAAAGAAAGAAGTGCAAACTGGACAAAGTTTTTTCAAAGACACGATTGAAAGTAAACCATCAACAAAAAATACCAAAGAAGATGCTGATAATATTGCTGATATCATAAAGACAGAAGTAACCAAGGTATTGGGTGAACAAATGCAAAAGCAGATTTTGAAAATTGTCACAGAATCAATCGGGAATCAGTTTTACAAAAAAGCCATGGAATGTTTGAAGACACTGAGGAAAGAATCAATTGCGAAAACTAAACCGAAAGAATTCAACAATTTCTTGGTGGATTTCAAGACAAAATTACTGGCAAAAGCCCGAAGTGATTTCTGGGAGCAAATCGTAAAAGAAAAACAAAGTCTTATCAGTAAAGTTGATTGTGAAGGAAGCTCAGTGACTCAGGAAGAAGCTGGAAAATTCCTTTGCAAAGAACAAGCGGCTGCTAAAACGGACACAACAAGCAATGCTCAGGACTCCGCAGAGGATCTCGTAAGTTTTTATCTTTCATTT

Transcript

pred2_43055.1

ATGGTACGATGTGTAGATGGGACGAATTATGACTACCCGTTAATCCGGATCATTGTACCGGGGGAAGCAGTTGTTCTCGTCTTGGATGTCAGTCCATCCATGTGCGATGATGCTCCACCTGGCCAGGATTCTCCACTGCAGTCCGCACTGGATGCTATTACAATGATTGTACAGCGCAAGATATTTTCTGAATCCAAAGATGAAATTGGATTGGTGTTGTTTGGCACAGTCGAAACAGACAACCCCTTGGCATCTGCGGATGACGATGAGGACAATTCTTATAGGAATGTCTCAGTCGTGCGGCGTCTTGATGTGGCCAATTTTGATTTCCTGGATTTAATCACCAAGTACACTCACTCGAAGACAACATCTGCAGATTATATTGATGCTTTGATTGTTGCAATGGACCATTTACAGAGTGCTTTGGAAAACAAGAAAGGTTTTAAAAACAAGCAGGTGATATTGCTGTCCAATTTTGATAATCCATTTGAAGATGATCAACTGAACCACATCATTGCTGGGATGAAGAATCAAGGAACAGAACTGAATGTCATTGGTCCTGACCTCGATTATGAAGTCAATGAGGAGGATGGTTCTGGTGATACCCTGACAAATGGTATCAAGAAAGAAAAGACCAAACAACAAAGAGCAGGAGAAGCCGTCGTGAAGAGAATGCTCAAAGAGACCAATGGAAATTCTTATTCTTTTGGAGAGGCACTGTCGATGTTGAGTCACTTTACTTCTAGGCAAACAACTCCAACTGCATGGAAGTGTGATTTGGAGATTGGAGATCTCATAACAATTCCTATACATGGTTATATCAAGCTGAAATCCCATGAACTTAAACAATCCTGGAAAAAAGTTTACAATAAAGACCCCGAGGCAACTTTCAGGATAGCCAAAACATTCCACCTAAACGATGAGCAGGAGACGGAAATTGGTATTGATGAAACTGTTGATGGTTTTCGTTACGGATCTACTTTGGTGCCGATGACTGACAAAGACAAAAACGAAATGAAATACAAATCTGAAAAATGTTTCAAAGTTCTTGGCTTTACCCGTGCTGACAATGTGATGACGGTCATGTTGTCTGCATTGATCAATGCATTGTACGAGACAAACACAGTCTCCATTGTGAGACGTGTTTACAGATCAAATTCAGCCCCGAaagtcggatgtcttgctccccatattaagaccaactatgaggtaaatCTTCATTTAGTCCAGCGGTTCTCAGAGTCCCAGtgtttaatgtaccatgaactgccttttagtgaagatgtacgttcatacacatttgcatccctgccaatggacaatgatgatggtcctgccaaaaagaaatttaaaccatctggtaaaTGCCTCCAACACAGAGCCCTTAATCCGCAGGAACCACTTCCAGAGTTGTCTCCCCTGATGGCCCGGCAACTAGATATCCCCACAAATATTGCCAATGCTTGCAAATCCAGTGTGGACGCCATCAAAAACAAATTCAAGTTAGAATTAATTCAAAAGAAAGAAGTGCAAACTGGACAAAGTTTTTTCAAAGACACGATTGAAAGTAAACCATCAACAAAAAATACCAAAGAAGATGCTGATAATATTGCTGATATCATAAAGACAGAAGTAACCAAGGTATTGGGTGAACAAATGCAAAAGCAGATTTTGAAAATTGTCACAGAATCAATCGGGAATCAGTTTTACAAAAAAGCCATGGAATGTTTGAAGACACTGAGGAAAGAATCAATTGCGAAAACTAAACCGAAAGAATTCAACAATTTCTTGGTGGATTTCAAGACAAAATTACTGGCAAAAGCCCGAAGTGATTTCTGGGAGCAAATCGTAAAAGAAAAACAAAGTCTTATCAGTAAAGTTGATTGTGAAGGAAGCTCAGTGACTCAGGAAGAAGCTGGAAAATTCCTTTGCAAAGAACAAGCGGCTGCTAAAACGGACACAACAAGCAATGCTCAGGACTCCGCAGAGGATCTCGTAAGTTTTTATCTTTCATTTTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02735	Ku	Ku70/Ku80 beta-barrel domain	Domain	Interproscan
PF03731	Ku_N	Ku70/Ku80 N-terminal alpha/beta domain	Domain	Interproscan
PF08785	Ku_PK_bind	Ku C terminal domain like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR005161	Domain	Ku70/Ku80, N-terminal alpha/beta	Interproscan
IPR006164	Domain	Ku70/Ku80 beta-barrel domain	Interproscan
IPR014893	Domain	Ku, C-terminal	Interproscan
IPR016194	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR024193	Family	Ku80	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036494	Homologous_superfamily	Ku, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12604	KU AUTOANTIGEN DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0042162	Molecular Function	telomeric DNA binding	Interproscan
GO:0043564	Cellular Component	Ku70:Ku80 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-