Gene detail

Detailed information of pred2_42714.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_42714.1	SUPPRESSOR OF TY 5	Sc3x4tf_333	1168464	1255433	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_42714.1

ATGTGGCACTTGGAACCTGCGATTAAAGAGCCTATTGCAGCAGTGATCATGTCTGACAGTGAAGATAGCGTTTTGTCTGACGCGGCGAGTGAACAGAGTGCCGCTGAAGAAGAGGCAAATGAACAAGTGGAGGCTGCGTCTTCTGATGTTGAAGAAACTGATGGCAATAAATCAGAAGCAGAAGAAGCTGGAAGTGATGAAGATGAAGAGGAGGAAGAGGATATGGAGGAAGGTGAACAGGAATGCATAAAAGCAATGGAAGATTTGGATGAAGAAGATGAGGAAGAGGAAGAGGAGGTGGTGGTGGAGGGTTACGATGAAGAGGACGATGACGATGAACCAAGTCAAAAGCGTAAAAAGAAAAGCCATTTTAACTTCATTTTGGATGAAGCTGATGTTGATGATGATGGTGAAGAATCTGAGGAGGAATGGGAAGAAGGTGCGGAAGACATCATTGATCGTAAATCTGTTCATGAAGGTCCAAGTGCCCGTGATATTGAAGGGAAAAGACGTTTGGAACAAATTTGGAATAGTGAAAAAGAGGATGAGATTGAAGAATATTATCGTCAAAGATATGGTGAAAACACGGTTACTGAGCGCTTCGGTGAAGGTGAGGAGATGTCCGATGAAATCACCCAACAAGGACTATTACCTGGTGTCAAGGACCCAAATATGTGGATGGTCAGATGTCGCATGGGCGAAGAAAAAGCTACGGTCATGTTGCTGATGAGGAAATTCATTACTTATCAGTTTACAGAAGAACCTCTGCAAATCAAATCTGTGATTGCAAAAGAAGGTCTCAAAGGTTATATTTATATCGAGGCCTACAAACAAACCCATGTGAAACAGGCGATTGAAGGCGTTGGGAACCTGAAAATGGGGAGATTCCGACAACAGATGGTTCCCATCAAGGAAATGACGGATGTTTTGAAGGTTGTGAAAGAGACCACCAATTTAAAACCAAAATCTTGGGTCCGCTTGAAGCGAGGTATCTACCAGGATGATTTAGCTCAGGTTGATTACGTGGAGCCTTCTCAGAATATAGTCCATCTGAAACTGTTGCCACGTATTGACATCACACGCAACCGTGGGTTAATGAAGAGTTCCAATCCTCCTCAAGATGCTGATAAGAAAAAACGTAAGCGTAAACCACCTCAGAAGCTTTTTGATGTTGATGATATCAAGTCAACTGGCAGCGAAGTGCGAGCAGATGGAGACTTCTGGATTTTTGAAGGCAACCGTTACAACAGAAAAGGTTTTCTCTTCAAGAGTTTTGCTATGTCTGCAATTATTGCTGATGGAGTCAAACCAACATTATCTGAACTTGAAAAATTTGAAAACACACCCGAGGGGGTGGACATGGAATTGCTCCCTGAAAAAGCCAGTTCCATGGAAGTGTCTCACTCGTTCATCCCAGGGGATATGGTTGAAGTTTGTGAGGGAGAGTTGATATTTCTCCAGGGTAAAGTTATGACTTGTGACGGCAACAAAATCACCATGATGCCCAAACATGAAGATCTCAAGGAACCATTAGAATTTCCAGCTCATGAACTTCGTAAACATTTCAAAATGGGTGACCACGTGAAAGTGATTGGTGGTCGCTATGAAAATGATACTGGCCTCATTGTACGCGTTGAAGAAAATAGGGTCTTCCTCTTCTCTGATTTGACAATGCACGAGCTGAAAGTCTGGCCTAAGAATCTCCAACTCTGCACAGACATGGCGACTGGTGTGGATTCTCTTGGGCAGTTCCAGTTTGGAGATTTGGTACAGTTAGACCACCAAACTGTGGGAGTCATTGTACAACTTGAGAAAGAAAATTTCCAGGTGCTCAACATGCACAATAAAGTATTGAATGTGAAACCGCAGTCTGTCACCCGTAAAAGGGACACACGAAATGCTGTAGCATTGGATTATGATTCTAATAACATTCATGTGAAAGATATTGTTAAAGTAATTGAGGGATCTCACTCGGGTCGACAAGGTGAAGTGAAGCATCTGTATCGCAGTTACGCCTTCCTCATGTCTCGTATGATGACTGATAATGGAGGTTTTTTTGTTTGCCGCACACGTCATCTTTCCTTAGCTGGAGGCTCACGGCGAAGCAACTCTAGCCTGAATACACTCGGTGCTTTCCCTCCAATGTCTCCACGATTGTCGAGTCCTTCTCACCCAAGTGGTGGCCAGAGTTCACCGTCTGGTGGACAGTCCGGACGTGGTCGTGGTACTTTTACCCAGAGAGATCGAGATCTCATTGGTGAGACAGTTCGTATCATCCAAGGTCCATTCAAAGGTTATATTGGTATCGTAAAAGACGCGACAGGATCAACCGCTCGTGTGGAACTTCATGCGCTCTGTAAGATTATCTCGGTGGATAGGAATCGGCTGAACAACGTCCATTCTTCAAAAATTGGATCTGGAAGTTCATCGTATGGCCGAACCCCACTCTACAGTGGCCAGACCCCGATGTGCTCCTCAAGGACCCCATTATATGGATCAGAAGGTGGCCGTACACCTCATTATGGTGGACAAACACCTCTCCATGAGGGCAGCAGGACACCAATCAGTGGAGGTACAGGTCCATGGGACCCTGCAAATCCTAACACACCATCGAGGACAAATGAGTTTGATTATACATTTGAAGACTCTGCTTCCCCTGGTGAATACGGTGCAGTGAGTACCCCTGCCACTCCTGCTTATAATGCTGACACGCCCAGCCCGTTGGGACCTTTCACTCCACAGACACCTGGCACTTACTCGCCATATCAAGGGACACCTTCCCCTTCAGGTTATCAAGCCACCCCAAGTCCTGCTGGTTATGTGGGTACACCCAGTCCTTCTGGGTACCAAGCATCTCCTTCGCCTCCTGGTTATGCTGCCACCCCATCACCATCGACTTATAGCCCGATGACACCTGTAGCGCCCTATACACCACAAACACCTGGTGCGGCCATGGACCAAGCTATGAGTGATTGGCATACGTCGGATATCGAAGTACGAATCAAGGACACCCACGATGACATTGCCCTCATTCACCAAACGGGGGTTATACGAACCGTGACCGGTGGTATGTGCAACATTTTCATCCCAGATGAGGATCGAGTCGTGAGTGTAACCAGTATGAATTTGGAACCAATTCCTCCTGTGGTCGGAGAAAAGGCTAAAGTTATATCTGGTGAAGATCGCGAGGCAATTGGAAACGTGGTCAGCATTGACGGAGACGATGGTGTCATAATGTTCGAGCCTGATTCTGTGAGAATTTTCCCGATCCGTTTTCTATGCAAAGTGCCATCGAGCCAAGTTAAAGGCTCCTCTTCA

Transcript

pred2_42714.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467	KOW	KOW motif	Family	Interproscan
PF03439	Spt5-NGN	Early transcription elongation factor of RNA pol II, NGN section	Family	Interproscan
PF11942	Spt5_N	Spt5 transcription elongation factor, acidic N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005100	Domain	NGN domain	Interproscan
IPR005824	Domain	KOW	Interproscan
IPR006645	Domain	NusG-like, N-terminal	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR017071	Family	Transcription elongation factor Spt5, eukaryote	Interproscan
IPR022581	Domain	Spt5 transcription elongation factor, N-terminal	Interproscan
IPR024945	Domain	Spt5 C-terminal domain	Interproscan
IPR036735	Homologous_superfamily	NusG, N-terminal domain superfamily	Interproscan
IPR039385	Domain	NGN domain, eukaryotic	Interproscan
IPR039659	Family	Transcription elongation factor SPT5	Interproscan
IPR041973	Domain	Spt5, KOW domain repeat 1	Interproscan
IPR041975	Domain	Spt5, KOW domain repeat 2	Interproscan
IPR041976	Domain	Spt5, KOW domain repeat 3	Interproscan
IPR041977	Domain	Spt5, KOW domain repeat 4	Interproscan
IPR041978	Domain	Spt5, KOW domain repeat 5	Interproscan
IPR041980	Domain	Spt5, KOW domain repeat 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11125	SUPPRESSOR OF TY 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006354	Biological Process	DNA-templated transcription elongation	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0032044	Cellular Component	DSIF complex	Interproscan
GO:0032784	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0140673	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-