Gene detail

Detailed information of pred2_40920.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_40920.1	AMYLOID PROTEIN-BINDING PROTEIN 2	Sc3x4tf_672	113981	175536	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_40920.1

ATGGCAGCCGGACCGATCGCTGAAAGGAATCAAGATGCCACAGTCTATGTGGGAGGCTTGGATGAGAAGGTCACAGAAGCCATATTATGGGAGTTGTTCTTACAAGCAGGACCTGTCGTAAATGTCCACATGCCAAAAGACAGAGTGACTCAGAATCACCAGGGTTATGGTTTTATTGAGTTCATGGGAGAGGAAGATGCTGATTATGCTATCAAAATAATGAACATGATAAAACTCTATGGGAAACCTATACGAGTCAACAAGGCTTCAGCTCATCAGAAAAATCTAGACGTTGGTGCCAACATTTTCATTGGTAATCTGGATCCAGAAGTCGACGAGAAATTACTGTATGACACATTTAGTGCCTTTGGAGTAATATTGCAGACACCAAAGATTATGCGAGATTTGGACACTGGCAATTCTAAAGGTTATGCCTTTATCAATTTTGCCAGTTTTGAGGCATCAGATGCAGCTATCGAGGCCATGAATGGACAATATTTATGTAATCGTCCGATCACGATTTCTTATGCTTTCAAAAAAGACATTAAAGGAGAGAAACATGGCTCTGCGGCTGAACGTCTCTTGGCTGCCCAAAATCCACTTTCCCTTACGGACAGACCCCATCAGTTGTTTGCTGATGCCCCTCCACCCCCTCAACAACCTCCGGCCCCTGTCCCTCCTTCATCATTTGCCCCACCTCCCCCACCTCCAGTCTCACAACCTCCAATGATGTCTTTGGCAAATGGACTCACAATGGGTCTTGCCAACTCACTGGTATCAAATTCAGCTGCCCCTCCTCCTCCAGTACCTCCACCTACATCTCTGCCTGTACCCCCTCCAGTTGGTGCAAATATGCCTCCACCTCCAATGCCTCCAGGGATGCCATCATTTCCTCCACCAGGTGGAGCTCCACCTCCAGGTCAACCTCCATCTTATCCTCCACCTCCACCAATGGCCCGGCCTCCTCCACCACCATCAGACCAAGGAAATTCGCAGTCAGTACCTCCAATGCCACCACCACCAAGAGCACCAATAGGTGGTGCACCCCCTGGACCTCCTCCACCAGGAATGGCACCTCCGCCAGGAATGGCACCTCCACCACCCGGTATGCCACCACCACCACCAGGAATGCGACCCCCTCCACCTCCACCAGGTTGGAGAGGACCCGCACCACCCAGAGGGCCTCCACCTTTTGGTCGTCCGCCACCACCTCCCCCACCTCAACAACGAGGACCTGGAATTCCTCCACCTCGTGGACCACCTGGACCAGGGCCAAGAGGACCACCCCCACCACCTCGGGGTGTACGCCCACCACCCCCTGGGGCTATGCGGCCACCCAACCAACGAAAGCCTTGCGCCTTCACACTCATAATATCCAACATGGCGTCTGCTTGTGTTTTGCAATGGGCTCCAGATTCACTTTATAATACGGCCGTTTCGGCCACTGTCGCTAATTATAGTATGTTCAGAAAAGATATACGGAATCTGCCTGAAAGTGTACAGTTTGATATATTCTATAAGCTCTACATTAAAGGGAGTTTATGTATTCTTGGAACAGATCTGGCAGAAATTGATAATTTTGCCAGAATTCTCAAAGTTCTTGACAAAAGATGTCTGTTACATATTTGTTTCCAAGCCCTTATTGATCATGGGACAAGAGTGAATGAAATCCTTGCTGATGAATTCTGTCAACGCAATCATCCGTCTGCCCATCCCTGTGAAAGTGACAGGAACAAAGCAATTCAACTTGGAACTTCTCTTGCGGGCTTTTTCAACGAGGCAGGTTGGTTCTTCAGCAGTGAGAAAGTTTATCACACATGTCGGTTGTTATGTGAAGAAGACAAAAGTTATGGCGGTTTGTGTAAATTATTAGAATGCAACGTTAGATTACTTCATGTACAGAATTCCAGTTGTAAATATAAAGAAGCCAACCAGACATATAAAGAAGCCTTCAGGATATTAGCATTACTTGAAGAAGCCCAGGTCCCTGTGAATAAAGCAATGTTGTATGGAGAATGCTGTGGTCTCTTATTTGCTGAAAGCCAATATGAACAGGCTTATGAATATTGTAATTTAGCAGTTGAACAACTCACACCAAATTTACCTCCTCGAACAATTGTTGATGTTCTCCGACAGTGTTCAAAGGCCTGTGTGGTCAAAAGAGAATTCAAAAAAGCTGATCAATTAATAAAAAGTGCTGTCCACTATGCTCGGGAACATTTTGGGAAACGCCACCCGAAATATGCTGATACTTTGCAGGATTATGGCTTTTATTTGTTAAATGTTGATTCAGTTGCTGCATCTGTGAAGGTCTATCAGATGGCATTGGATATCCGTCAAGCTGTGTTTGGAGGAAATAACTTCCACGTGGCCATTGCTAATGAAGATCTTGCCTATGCTTCGTATGTGCACGAATACAGTTCAGGACATTTCAGAAATGCACAACACCATGCTGAAAAAGCGATTGAAATTTTATCCCGGATTTTGCCCAATGATCATTTACTTTTGTCCTCATCAAAACGAGTGAAAGCTTTGATTCTTGAAGAAATTGCAATTGACAATGAAGACAAGAGTGTACGAGAACCCTTATTGCGTGAAGCCCGAGAACTGCACGTCCAATCCCTGACCCTTGCCATCAATGCATTTGGGGAGAGCAACGTGCAGACAGCCAAACACTACGGCAATTTGGGCCGCCTTTATCAATCAATGCATGAATACAAGCAAGCTGAAGCTCATCATTTGAAGGCAATTGAAATTAAAGAAAGGTTATTGGGACCCGAAGATTATGAAGTGGCTTTGTCAGTCGGACATCTTGCATCATTGTATAATTACGATATGGAATATCTCGCTGAGGCCGAGAGTTTATACAAAAGATCAATTGAAATTGGCAAAAAATTGTTTGGTGCTGGATACAGCGGACTCGAGTACGATTATCGGGGATTGTTACACTTGTACCACAATCGAAGGGACATGGAGAATATGATGGAGTACAGCCACATTTTGCAGGACTGGAATCGGATTCGCGATCGGACAAATGCTGTGGAAGTGAAGCCATTAGACTTTTCACTTGACTTTTCATTACAAGATCTTCATAAAAATCTCTTCAGGTCAGATGCAAACGTTACCCGGTGGTGGCTAAAAGCTGAAAGATCCATTTCTAAAGAACACTGCGTTGATTCAAGACGGGTTACAAGTTCT

Transcript

pred2_40920.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR034158	Domain	SF3B4, RNA recognition motif 1	Interproscan
IPR034159	Domain	SF3B4, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR042476	Family	Amyloid protein-binding protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46575	AMYLOID PROTEIN-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0031462	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:1990756	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-