Gene detail

Detailed information of pred2_40549.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_40549.1	TUBULIN POLYGLUTAMYLASE	Sc3x4tf_60	4344984	4306559	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_40549.1

ATGTGTGACTGGGAATTGGGTAAGATTACATCAGGGCTTAATGAAGTGTCATTGAAAAAGCAATTACCTTTGCGTTTTTCACAAACATCACAGACTTTGCTTACAGAAAAACGCCCTTTCCAGTCTGACTCAACTTCTGTTCGACAGGTTTCTTATTTTCAAAGACTAGATCTCCAAACTGTAAAAGATGGCAATTTTCCTAGAAATTTGTCACAGTATTCCACACCATCCCAAATTTCGAAGTATTTTTATAGCCATCAACCATCTAAATATTTAGGTTCAACCGATTATAATTATTTCAAATTCAGTGAACCTTCAAATCATAGAAAAGAAAAGTCTTCCAATCCCTATTCCAGGCCATTGAGTGCTAAGGAATTGGTGCAGAAATTTTCAGAAAGAAAAATGGCTTCATCCTCCATTACCGCTCATAACAAGACTGATAACTACAGCTGTAAGGGTAATTTCCCTATGAACCTCAACTTCTTCCTCAAGCCACAAAGCCTTTTAAAGACTGATGTTGCCTTAGAGAAAGTTGAAATCACCAAACATTCCTTGATATCTGACAGTAGCTTGGTGTTAAAGCCCGTCTCCAACAGTCCATTAAAGGAAAGTCAGAGCACAAACAGTGTATTTCCCCAAAGAGCTGCTTTGTCAACCACTCCAGTTCCTGTCCAATTTTCTCCCACTGGTAAACACACATCTTCCATTCCTAAGCCAGGCTTTGCACAGACGAAAGTTTCTGAAAGGCCAGTTTCTGTTAGGAACTTGAATTACACTCCGGCTGTCTCTTATGATGAAGTAATGCTTTCAAATAGTGAAGCCATGGACATACAGCCAGAAAATCCCAAGGAGGAAATCGAGACATTGGATAACTGTAGCCAAACAATGTATTATAAAATTGGATACAAAGCAGAAAAATGCTTTTCTGAAATGAAACTCTCAGTAGCTACAGGCTTTAGTCCGGAAAGTTCTAAAATCAAATCCTTTTTGGAAGATGAAGGAGAATTGCAGGCTAGCATCAACCAAGAGACGACTTCATCTTCTGCAGATATGTCCTCTGCAATTAGCTACTCGCCTGACAACAGCTTTATTAAAAGCCGCCATCACGCTGATGGACATGTTGCCATCAATTCTGAAGGTGAAACTGATGATTGTATGACAGAAGAAACAGATTCTGATTATGAAGAAGAATGTGATTTGGCCAGTAGTTGCAGTAGTCTGTCACAGCAGTTGTCCAGTTTGCAACCCAAGTTAACATCCTCTGATAAGCCAAATGGCTCTTCAGGTACACAGCACGTTATCTTTCCGGCCCTTACTGCCAGTCAATTCTTAAATGTACCACCAACAATCAACTTTGTGTACAATGGATGCAAAGTTGAGTGTTTACCTCCAGAGATGAAACGTCTGTTGAGATGGCGGCTTAGCCCAATTACACCACTTGTTGTAAAAAGTGCTTTAGTGAGGGCTGGCTTCAGAATAACTAAGAGGAATTTTGATTGGATTGGCTGTTTTGGTAAGCACATGAAAAGCCAAGCATTTCGTACACTCAGGGATTTTCAGAAGCTTAACCATTTCCCTGGTTCCTTCCAAATTGGCCGCAAAGATAGACTTTGGAGGAATGTATCCAAATTACAGTTGCACTTTGGGAAAAAAGAATATGGTTTCTTCCCACAAACATTTGTTCTTCCAACTGATCTAAAATTATTGAAGAAAGTGTGGGAAGATGGTGGAAACCGTTTAAAATGGATTATTAAACCACCAGCATCAGCTCGTGGAAAGGGAATAAGAGTCGTTCACAAATGGAGTCAAATTCCAAAACGTAGACCTATTATTGTTCAAAAGTACCTCTCCCGACCTTACCTTATCAATAGCAGTAAATTTGATATCCGTCTTTATGTGCTAGTAAGCTCTTTCGAACCTCTGAGGATTTACTTATATACTGATGGATTGGTTCGGTTTGCATCCTGCAAGTACTCTACCACTATAAGCAGTCTAGGCAATCGTTGCATTCATCTCACCAATTACAGCATCAATAAGATGAATCCATATTATCAAAACAACACTGGTGATAATTATCAAGGACATAAATGGAGCCTGAAGACATTGTGGAATTATTTGAAAAAGCAAGGAATCAATGTTTATGTTATCTGGGAATCTATTAAAGATATTGTCATCAAAGCTATAATCAGTGGAGAAGCCAATATTTCCAGTTCAACAAGAACTAATTTGAAAAGTTCTTACTCTGCATACGAGTTGTTTGGATTTGATATCTTGTTGGATGAGAATCTCAAACCTTGGCTTTTGGAAGTGAACATTTCTCCCAGTCTTCATTCCACCACTCCATTGGATGTAGAGATCAAAGAACCAATGGTCTGTGATGTACTCAACATTGCTGGTTTTCACTTACCTGTTAAGGATGATCTGACCGCCCATGTTATCAACAATCACATGGCAGGTGGCCATTTCAAACCCCCAAATAACTACTGCCTTGATAAACGACTCTTCAACCAAAATCTTTCTGCTGATGAAAAACTGAAGCATAACTACTATTTACAGCGCCAGCTTGACATGCAAACTCAACAAACCATTTTGGATATATTAACTCCATACGATATCCGTGCTTTACTGCTGACTCTTGATGAAGAGAGGCGCTGTGGCAATTTTGAACGCGTTTTTCCAAATTATTCAACTTCCAAATATCTACGTTTCTTTGAACAAATGAGATACAGCAATTTGTTGCTGAATCAATGGTTTCAACGCTATCCCAGGTTGGATTCAAGAGTGGATTCCTCCAACATTAATTGGAGCTTCTGTTCATTCTACAAGTTCAAGGTGTGTCACAACCGTGGGAAAGTCTCAAGAAAAGAAATCCACTTCGGAAAAGAACAGCTCATCACTGAAAAGGATGGAGATTTCTCAGCCATGTGTGGTGCCAATCCTTCAGCTGAAGGAGGAGGTGATGATGACTTCGCAGCAGCTGAGAAGACCGACATCAATATAGTCATTGCTCATAAATTACAACCCTCTTGTTTCACTAAGAAACAGTTTATGGTATATATAAAGGATTATTTGAAAGTCATCATTGCGAAAATTGAAGAGACAGAACCTGACAAAGTTCCCACATTGAAACCAAAATTACAAGCCAAAGTAAAAGATATTGTGGGCAATTTTGACTCCTATGAGTTTTATAGTGGTGAAACCATGAACCCAGAAGGCTGTGTTCTACTTTTAAACTACAGGGAAGATGGTATCACGCCATTTTTCACAGTCTTTAAAGATTCTGTCGAAAGTGAAAAATATGTGGGTATGAACACAACTTTGGCACAAAAACATGCGAGTCAGGATGGGGAACCCAAACTTATAAAAATTGGAATA

Transcript

pred2_40549.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00838	TCTP	Translationally controlled tumour protein	Domain	Interproscan
PF03133	TTL	Tubulin-tyrosine ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004344	Family	Tubulin-tyrosine ligase/Tubulin polyglutamylase	Interproscan
IPR011057	Homologous_superfamily	Mss4-like superfamily	Interproscan
IPR011323	Homologous_superfamily	Mss4/translationally controlled tumour-associated TCTP	Interproscan
IPR018105	Family	Translationally controlled tumour protein	Interproscan
IPR034737	Domain	Translationally controlled tumour protein (TCTP) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12241	TUBULIN POLYGLUTAMYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0015631	Molecular Function	tubulin binding	Interproscan
GO:0018095	Biological Process	protein polyglutamylation	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan
GO:0070740	Molecular Function	tubulin-glutamic acid ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-