Gene detail

Detailed information of pred2_38680.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_38680.1	ASPARTATE AMINOTRANSFERASE	Sc3x4tf_261.1	2883164	2834792	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_38680.1

ATGAGTGGAGGAGGCATCCCGTATCTGGGTAGCAAGATAAGCCTCATTTCGAAGGCTGAGATTCGCTATGAGGGCATTCTGTACACTATCGACCCACACGAGTCCACTGTTGCTCTAGCGAAAGTGAGATCTTTTGGTACTGAAGATCGTCCTACCGACCGTCCTGTAGCCCCAAGAGATGAAGTATTTGAATATATCATATTCAGAGGCAGTGACATCAAAGATATTCATGTTTGCCAACCTCCTAAGCCCCAGCCTCTGCAAGGACTACCACAAGATCCTGCCATTGTCAAGTCATCCCAGCCAGTGACAACCACCTCTTCTTACCCTTTACAACAACAGCAGCAACAACAACCTCAACAACAACATGGCTATGGAGGACAATCTTACCAACCATTTGGAGGAGCACAACTTTATGGCGGTCAGTATGGTGGTCACCAATCCTATCATGGTAGTAGTCACTCTCAGTCTGTCGCAGGTTCACTCATTCGCAGTCATGGCCGTATGACCACCATTGACCAAGGTGTGCAGGTAGATGCCCAGCAGATAAGGAAATCTGGTTCTCGAGGCCCTACACCACCACCAAGTCGCAAGTCTCCAACCTCTGACCAAGGTACCCAAATCAATACGGATGATGGCAAAGGCTATTCTAACAAGGGACATCAGCAACAACTGTCACCAGTTGACCGTCGTGACCGACGCAATAACCAGAGGGATCAGCAGGGTAACCGTACCACAACTTTCACTCGTGGAAGGGGTGGAAGAGGAGCCTTCATTCTAAGATCTAATGATGCAGGTGTTTCTCGAGGAAGACCTCGTGGAGTTGCTCGTGGTATATCCCGTGGGAGGGGTGGTTCAAGACAGCCTTCAGAGCCACTTAAATTTGAGAATGACTATGACTTTGAAAGTGCCAATGCTGAGTTTGAAGAAATGGAGAAAGAGCTGAAGAAACTTACTCTAACTTGCATTTCAGCTGAGAAGACCGCCAGTGTTGTGGTAAATGGAGAGAAGCCAGCAGAAACTGTAGATGAGGGTGAAGAACCTGAAGTTGATGATGTAAAGAAGGAAGAAAAGAAAGATGAAGAAATAGTATACTATGATAAAGCTAAATCCTTCTTTGACAATATTAGCTGTGAAGCCACGGAGCGTGAACAGGGTCGTGTAAATAGGACGAGTTGGAGAGAAGAACGGAAACTCAATGCAGAAACGTTCGGAGTTTCAGAACGCTACAGAGGTCGAGGTAGAGGTTTTTACAGAGGAAGAGGTGGCTTCAGAGGACGGCGGGGTAGAGGTGGCCGAGGTGGTAACCGTGGAAACTACAGAGGAAATTACCGGGGCAATTTCCGACGAAATTCCGGAAATACTGGCTGGGGTGACTCTGGATGGGGCGACAATCACCAAAACACTGAAGCAAACACAAATGGAGAAAAAGAACCTATGGGCAAGAAACAAGATATAATTGTAACTGATTACCTTACAGAAATGGTACATAAGCTTTTACTGGATTCAAACGCATCTGGAAAGGTGAACAACAAATTATGGTCTGATGAAGGTGATGAAATCTTGTGTCGGAGGAGTCTGAAAGAGACAAATTCCTTGGTGCACCAACCTGCATTTTTTCACTCCCTACAACTGTCATCTGTAAGAGAAGTACACCCATGCAACATGCCGGAAGCAGACACAGAAGTACTCATATCATGGTGGACCAATGTAGAAATGGGTCCTCCTGATGTCATCTTGGGGGTGTCAGAAGCCTATAAGAGAGACACCAGTGCTAAAAAAATGAATCTTGGTGTTGGTGCTTACAGAGATGATAATGGTAAGCCTTATGTGCTTCCATCTGTGCGCAAGGCTGAAGAATTGTTATTGTCAGAAAAACTGGACAAAGAATATTCTCCCATTGGTGGTGATGGTGGCTATGGTACAGCTGTAGCCAAATTGGCTTTCGGAGACGACTGTGCAGCTATTAAGGATAAATTGTCAAAATGGTATACTCCCTCCAAGACTTTTTATATCCCATCACCATCCTGGGGTAACCACACACCAATCTTCAAACATTCTGGTCTTGATGTAAAGTCTTATGGTTATTATGATCCCAAAACCTGTGGATTGGATTTCCAAAGAGCTTTGTCTGACATCTCTAAAATTCCAGAAGGATCTGTAATCCTCTTACATGCATGTGCACACAACCCCACAGGAGTTGACCCTAGGCCAGCCCAATGGGATGAACTTAGTAGTGTCATTAAATCTCGCAAACTGTTTCCTTACTTTGACATGGCTTACCAAGGCTTTGCTAGTGGTGATACTGTCCAGGATGCTTATGCTGTCCGAAAATTTGTTGCTGATGGCCACAAAGTTGCTCTTTGTCAGTCCTTCTCCAAGAACATGGGACTTTATGGTGAGAGAGCTGGTGCCTTCACTCTGTTGTGTTCCGATGCTGACGAAGTTGCTCGTGTGATGTCACAGGTTAAGATCCTCATCAGACCTATGTATTCTAACCCTCCTATCCATGGTGCCCAGATTGTCAAGAAGATCCTTACTACTCCAGACCTCAACACTCAATGGTTGGGTGAAGTAAAGGAGATGGCTGACCGTATTATTAGCATGAGGGAGAAGCTGGTGGCTGGTCTGAAACGTGAGGGTTCCTCCCACAACTGGCAGCATGTCATTGACCAAATTGGAATGTTCTGCTTTACTGGACTCAAGCCAGAACAAGTGGAGCGTTTGACTAAAGAATTTTCTATCTACCTGACAAAGGATGGACGTATATCTGTGGCCGGTGTTGCATCTGGAAACGTAGACTATCTTGCCCATGCTATTCATACAGTAACTAAA

Transcript

pred2_38680.1

ATGAGTGGAGGAGGCATCCCGTATCTGGGTAGCAAGATAAGCCTCATTTCGAAGGCTGAGATTCGCTATGAGGGCATTCTGTACACTATCGACCCACACGAGTCCACTGTTGCTCTAGCGAAAGTGAGATCTTTTGGTACTGAAGATCGTCCTACCGACCGTCCTGTAGCCCCAAGAGATGAAGTATTTGAATATATCATATTCAGAGGCAGTGACATCAAAGATATTCATGTTTGCCAACCTCCTAAGCCCCAGCCTCTGCAAGGACTACCACAAGATCCTGCCATTGTCAAGTCATCCCAGCCAGTGACAACCACCTCTTCTTACCCTTTACAACAACAGCAGCAACAACAACCTCAACAACAACATGGCTATGGAGGACAATCTTACCAACCATTTGGAGGAGCACAACTTTATGGCGGTCAGTATGGTGGTCACCAATCCTATCATGGTAGTAGTCACTCTCAGTCTGTCGCAGGTTCACTCATTCGCAGTCATGGCCGTATGACCACCATTGACCAAGGTGTGCAGGTAGATGCCCAGCAGATAAGGAAATCTGGTTCTCGAGGCCCTACACCACCACCAAGTCGCAAGTCTCCAACCTCTGACCAAGGTACCCAAATCAATACGGATGATGGCAAAGGCTATTCTAACAAGGGACATCAGCAACAACTGTCACCAGTTGACCGTCGTGACCGACGCAATAACCAGAGGGATCAGCAGGGTAACCGTACCACAACTTTCACTCGTGGAAGGGGTGGAAGAGGAGCCTTCATTCTAAGATCTAATGATGCAGGTGTTTCTCGAGGAAGACCTCGTGGAGTTGCTCGTGGTATATCCCGTGGGAGGGGTGGTTCAAGACAGCCTTCAGAGCCACTTAAATTTGAGAATGACTATGACTTTGAAAGTGCCAATGCTGAGTTTGAAGAAATGGAGAAAGAGCTGAAGAAACTTACTCTAACTTGCATTTCAGCTGAGAAGACCGCCAGTGTTGTGGTAAATGGAGAGAAGCCAGCAGAAACTGTAGATGAGGGTGAAGAACCTGAAGTTGATGATGTAAAGAAGGAAGAAAAGAAAGATGAAGAAATAGTATACTATGATAAAGCTAAATCCTTCTTTGACAATATTAGCTGTGAAGCCACGGAGCGTGAACAGGGTCGTGTAAATAGGACGAGTTGGAGAGAAGAACGGAAACTCAATGCAGAAACGTTCGGAGTTTCAGAACGCTACAGAGGTCGAGGTAGAGGTTTTTACAGAGGAAGAGGTGGCTTCAGAGGACGGCGGGGTAGAGGTGGCCGAGGTGGTAACCGTGGAAACTACAGAGGAAATTACCGGGGCAATTTCCGacgaaattccgGAAATACTGGCTGGGGTGACTCTGGATGGGGCGACAATCACCAAAACACTGAAGCAAACACAAATGGAGAAAAAGAACCTATGGGCAAGAAACAAGATATAATTGTAACTGATTACCTTACAGAAATGGTACATAAGCTTTTACTGGATTCAAACGCATCTGGAAAGGTGAACAACAAATTATGGTCTGATGAAGGTGATGAAATCTTGTGTCGGAGGAGTCTGAAAGAGacaaattccttGGTGCACCAACCTGCATTTTTTCACTCCCTACAACTGTCATCTGTAAGAGAAGTACACCcatgcaacatgCCGGAAGCAGACACAGAAGTACTCATATCATGGTGGACCAATGTAGAAATGGGTCCTCCTGATGTCATCTTGGGGGTGTCAGAAGCCTATAAGAGAGACACCAGTGCTAAAAAAATGAATCTTGGTGTTGGTGCTTACAGAGATGATAATGGTAAGCCTTATGTGCTTCCATCTGTGCGCAAGGCTGAAGAATTGTTATTGTCAGAAAAACTGGACAAAGAATATTCTCCCATTGGTGGTGATGGTGGCTATGGTACAGCTGTAGCCAAATTGGCTTTCGGAGACGACTGTGCAGCTATTAAGGATAAATTGTCAAAATGGTATACTCCCTCCAAGACTTTTTATATCCCATCACCATCCTGGGGTAACCACACACCAATCTTCAAACATTCTGGTCTTGATGTAAAGTCTTATGGTTATTATGATCCCAAAACCTGTGGATTGGATTTCCAAAGAGCTTTGTCTGACATCTCTAAAATTCCAGAAGGATCTGTAATCCTCTTACATGCATGTGCACACAACCCCACAGGAGTTGACCCTAGGCCAGCCCAATGGGATGAACTTAGTAGTGTCATTAAATCTCGCAAACTGTTTCCTTACTTTGACATGGCTTACCAAGGCTTTGCTAGTGGTGATACTGTCCAGGATGCTTATGCTGTCCGAAAATTTGTTGCTGATGGCCACAAAGTTGCTCTTTGTCAGTCCTTCTCCAAGAACATGGGACTTTATGGTGAGAGAGCTGGTGCCTTCACTCTGTTGTGTTCCGATGCTGACGAAGTTGCTCGTGTGATGTCACAGGTTAAGATCCTCATCAGACCTATGTATTCTAACCCTCCTATCCATGGTGCCCAGATTGTCAAGAAGATCCTTACTACTCCAGACCTCAACACTCAATGGTTGGGTGAAGTAAAGGAGATGGCTGACCGTATTATTAGCATGAGGGAGAAGCTGGTGGCTGGTCTGAAACGTGAGGGTTCCTCCCACAACTGGCAGCATGTCATTGACCAAATTGGAATGTTCTGCTTTACTGGACTCAAGCCAGAACAAGTGGAGCGTTTGACTAAAGAATTTTCTATCTACCTGACAAAGGATGGACGTATATCTGTGGCCGGTGTTGCATCTGGAAACGTAGACTATCTTGCCCATGCTATTCATACAGTAACTAAATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan
PF09532	FDF	FDF domain	Domain	Interproscan
PF12701	LSM14	Scd6-like Sm domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000796	Family	Aspartate/other aminotransferase	Interproscan
IPR004838	Binding_site	Aminotransferases, class-I, pyridoxal-phosphate-binding site	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR019050	Domain	FDF domain	Interproscan
IPR025609	Domain	Lsm14-like, N-terminal	Interproscan
IPR025761	Domain	FFD box	Interproscan
IPR025762	Domain	DFDF domain	Interproscan
IPR047575	Domain	Sm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11879	ASPARTATE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004069	Molecular Function	L-aspartate:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006533	Biological Process	aspartate catabolic process	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-