Gene detail

Detailed information of pred2_38006.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_38006.1	STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED	Sc3x4tf_736	1538185	1540448	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_38006.1

ATGAAGGAAGTAGCAAATCAAGTTAACTTATGGGAAAATGCATACGAAGAGCATGCAGTTAAGCAGCTACACAATCCTTTTTCTCAATGGTCAGGCGAGCAACCAAAGAAACCATTGACTAGTCCAATAGGGGAATATTCAAGCATCTTCAGTCCAGGAGAATCGTCCCAGAAGACTATTCCTTCACAAACCTTCTACCCATCAGGAGAAGCGTCCCCGAAGATTATTCAACCGAGATTTTTTTACCCACCAGGAGATCTGTCCCCAAAAACTATTCCTCCGGAAAATCTTTACCCATCTGGAGAACCGTCCTCGAAGACTATTCAGCCAAAATATTTTTACCCCTCAGGAGGAATTTCCCCAACGACTATACAACCGAAAACTTTTTATCCGCCAGGAGAACAGGCTTTGAATACTATTCATCCAAAATATTTTTACCCACCAAGAGAACAATCCCCGCTGACTATTCCGCCAGAAACTTTTAACCCATCAGGAGAACCATCCCCGAAGACTATTCCTCCTAAAACTTTTTACCCGCCTGGACAACCCTCCCCAAAGACTATTCATCCAAAATATTTTTACCCACCAGGAGAACTGTCCCCACTGACTAATCCTTCGGAAACTTTTTACCCGTCAGGAGAACTGTCCCCAAGAATTTCTAATCAAAAAACACCTGACCCGTCAAAGGAACAGGACCCAGAACTCTTTAATCCCGAAAAATCCAGCAAGTCGGCTGGAAACACAAATTTTTTGGCCCGGGTTAAAAAATGGCGCCAACCAGGGACTGAAGTACAAGATCTGGTTCCGTTAACAAAAATCCCCAAACCAGCAAAACCAGCTGAGCCGATCAAAGTAAAGACCCCGACCCCATGGGAAGATCCCTTGACTGGGCAAACCTTCAGTCCTCGAGAACCAAGTTGGGCAGGTAGGTCAGAGCAGATACCCTTCAGTCCACGCGGAGTTGAAAGACCGGAATTTCTGAATTGGAAGCCTTTGCCAGAAAAAGAATATTTTAAGCTTAGTCCAGCAACTCCTATAGTACCAGATGAAGTTTCAAAATCTCTACCTGGATGGAATCCGATGGGAAAATTTTTTGCTAACAATATTGGAGGGGAGCCGACATTAAGTCCTGAATTTTATAGAAAACACGACACTAGCGTTGAATACAATCCTGATTCCACTGGAAACTGGGATCATTCAGTCAGCATAACCCAGTCTTACACAAACCCTGAAGAATCTGAATCTACCAACATGGATTACAAATTTCAGAATATGTCGAGCCAGATTAATATGTGGCAACAACGAGCCAAGGAACACGAAGCGAAGCAACTCATCAACCCCTTCTCTAATTGGGAAGGTGCTTCGATTTCTGCCAGGCGTTCCGTAATGTCCAAGACGGATCCTGAATATGGATGGCCAGTCAAAGGTTCTATGACAGAAAAACGTGGCAAAAGGGCTAGTGAGCACATTAGCAATGAGATTGTATATCTGTGTCATATTATAACTGACCAGGGGAAGCGTCAACCTGACGACTCTGTCGACATAAAATTTGGTACCTTGTTCAAGGCCTACACTAGAATTTCCAACAAACTTGTTGGTATGTTAATGAGGGCCCGCAAACATGATCTAGTACACTTTGAAGGGGAGATGCTATATCAGGGTAGGGATGATGACGTAGTAATCAAACTTCTAAAGGCAGTGGAGCAACAGACGACTGAGTCAGTGGCAGGTATTGAGTCAGAAAGTGGAGACGCTGCTCGAAGTTCTGGAGGGGCGCCAGCAGATACTATAATACCAGCATCAGGTGAAGAAGAAGCCAGTGCCACAAGGGCTAGCTCTGAAGAGATGTTGTCAAATAGAGAGTCTGTTAATATGATGATGAAGAGAGGTTCCTCTTTCAGCAGTTCTTCGATGAACGAGGAATCGAGTATGTCCATGCAGGAAGAATCTCTCGGAAGTTCTAAAATGATGGCATCTTCTTCAAACAGTACACAGATGATGTCAAAAGAGGACGGTGAATTCAGTACGAAAATGTTTGCCGGATCTTCGAACAGTAGCAAGATGATGTCGAAGGAAGAAAGCTCTACTAGCACAAAAATGTTATCAGAATCTTCTAGCAGTATGAAAATGCTGAAAGAGGAAGGTTCTCTCAGCAGCCAGATGTTAGGGGAGGGAGTCGGTGACAGTACTAAAATCTGTAACGCAAGACACATTAATGGATTCCCTGAAGGCTGG

Transcript

pred2_38006.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14705	Costars	Costars	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026111	Family	Actin-binding Rho-activating protein	Interproscan
IPR027817	Domain	Costars domain	Interproscan
IPR038095	Homologous_superfamily	Costars domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22739	STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0030017	Cellular Component	sarcomere	Interproscan
GO:0035025	Biological Process	positive regulation of Rho protein signal transduction	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051091	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-