Gene detail

Detailed information of pred2_37324.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_37324.1	DESMOGLEIN FAMILY MEMBER	Sc3x4tf_298	12464812	12538924	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_37324.1

ATGGTTTCTATTGGTTATGTTCTTGAGGTTGAAGCAGTGGACAGTGGTTTCCCAACTCTTACAGGAACAGCAACACTGTCAATTGAGATTCTGGACGTTAACGATAGTCCACCTCGCTTTAGCCAGCCAGCATATTCAACGACAGTCCAGGAGGATCGTGAACATGGCTACAGCATAATCAAATTCGATGTAACAGATGATGACCTCAAACCTAACGGAGGCCCTTTCTCTTTTGATATAATTTCTGGTCTCGGCCGTGAAAAATTCCGTATTGACAACGATGGCACTCTACGCTCTTTCAGGGACCTTGATCAGAAAATCAAGGATAGATACGAGCTAACGGTTCGAGCCTACGACAATGGCAGTCCACCACTTTATTCCGACGCTACGGTTACTATTGAAGTCACAGAGGAAAGTACAGTCCCACCGGAAATTTCAAACTTAGAAATTTCCATCAACTCCTACCAAGACAAGTTCCCTGGTGGGATAATTGGCAAAGTTAGCGCTAGGGACGATGATATGCATGATACCCTAAAGTTCAAGATCGTCTCTCAGAATCTACACCTTTTTGACATCCACGAAGATGACGGTCGGATCATAGCCAAACCTGGCCTCGACGCTGGGCGTTATTTGATTAACGTCAGCGTGACAGATGGAAAATATTCCTCGTACGGTAAGGTGATGGTTGACGTTACCGTCATTACAGAGGATATGGTAAAGAACTCTGTAACAATTCGTCTGGGCAACGTCCAGCCGGACACATTCCTTAGGCGTCACCTCAGGGACTTCCTGAAAATCTTGAAGAACGAGATGTCTATCCGTAGCAGAGACATTGAAATCATTGGTCTCCAACCCGCTGATATGAGCATAGAGGCTCTGACCCGACAGAAGCGTTCCACGTCCGACGACTTGGACGTTTTGTTTGCAGTGAAGAAATCTCACAACGCGTACATGCGGGGCAACCTGCTGAGGAGAAGAGTGCTGAATGCAGCACCCAAAATCCAGACTGCCCTCCGCCTGAAGGTGCTCAAAGTCTTCGGCGACGTGTGCGAGAAAGATACGTGTGAGATTGGCACTTGTATAGGGCTTGTCGAGATTGATAAAGAACACCCTAGCGTGACGGAGATCGGTGGACGGAGTTTTGTATCGCTGAAACACCAACACACGTACGAATGCAAGTGTCAAGAAGAGAAGTGCATCTGGTACTTAGACCCTTGCATTAGCCACCAGTGTCCGCCTTATAAAGTATGCAAAGAATCTGATATGTCCGTAGCACAATGCGTGTGTCCAGAAGGCAAGACTGGAATCTACTGTGATGAAGATTCTCGGCCTGACTGTGCAGAAACAGGCTGTCGACACGATAACCGACCGATGACATTTGCTGGACGTAGCTACGCCCGATGGACTTTGGTGGACAAACATGGCTTCGAGAACCGTTTGAGTGTGTCAATGAAGATAAAAACACGACAGAAAAATGCAAACCTAATGTTTGCCAGTGGAACTGTCGACTACAGTATATTAGAGCTCTTCAACGGAATGGTACAATATAGATTTGAATGTGGAAGTGGGGTCGGCCGTGTCCAGCTCCCCCGCAAGATTAGTGACGGTGACTGGCATACGATCTTTGTGGAGCGTATGGGAAACACGGCCACCATCAACTTGGACGGACGTTATACGGCGTGGTCTAGCGCGCCCGGCGAGCATGATGTCCTGAACTTGGGCAGCAACAACGTCTACTTTGGAGCCGAAGTGGAGACCTTTCCTAACGGGTTCAGAAACATTGACAAAGGCTTCGAAGGTTGCATGGAAGACTTGCGGCTGCACAATATCCGACTGCCCTTCACTGACCGGAATGCAGTTGCCACTTCCCAAGAATTCCACAAAATTGAATTTAACTGCCGAGACAACGTTTGGGAAAAAGGTGACAGTGGTCCTTTATGTGAATTCGAATCCGATAAGTGTGCCCAAAACCCATGTAAAAATGGCGGCACATGTTACAATGGCCCAGGCTCCTATTTCTGCAACTGCAGTTCAGACACCAAGGGCACCCATTGCGAGGAAATTCTCTTACCAAACATTTCATCCAACCGATATGGGATCACCCAAAAAGAAATCATTATAATCATTGGTGCCGTTAGTGGTCTGTTTGTTATCGTCATCCTGTTGATAGGTGTCCGCTTTTGGTATCAAAAGAAGCAAGCACGGCGCCGCCCGACTCATTCACGCTCACGTATGGTTGACAACGTCATCTTGAACAGCGCTCATGATGAACTGAAGCAACACAAACTGAGCAACAACGAGCTGCACCTGCCGCAGAGATGCCCCAGCCCACAGCCGCCTCCTGTACCGAACCGCCCTGCTTCCTACACCCCGAGCAACCACGATTCACTGAACACGCTCAACAACTTCGACGCAGTTCGCAACTATGGCAGCGCGGCTGATCAGCTGGAGAATCCGCACAATATTCCGGTGTATACGTTTGACCATTTGCAGACATTCAGTCCATACCCACGAAATTGCGCAAGCATTGCCCCTTCCCTGCCTCCGCCACCACCCTCCAACTCTGCATCAGACACAGATTCTATACAGAAGCCAAACTGGGACCTTGATTATCCAAATATACTGGAGAACTATCCAGAATCTGAAAGAAAGAGTTCTGTGAACCTGGCCAAGGCGATGCCTACAGCTGACCCATCCCCCCGTTTCAAAAATGTCTTTTCGGGAAGGGACACCACCTCCTTTAGCAGTTTACCGATCTCAGAGTCTGAGGAAGATCTACCAGGCTATCACTGGGACACGTCAGATTGGGCGCCCCATTCTGCATTACCCAACATCAGCGAGCTCCCAGTGAAAGAGGTCCTCGACTCGCCGAGTTCATCACCGCAGAGTAATGATTCAAACACACATGTCGACCCACCCAACATGGAAGATGTGAATGACGCTGAAATGGACGACCCGGAGAACGACTCTGAATACGTTGGAGATTCGGAATGCACCGAAAACTTTGACGACGAGGAAGAAAATGAAGATCCGAATGCTGGCTACCACCCGGCTCCTAACTTCCAGCAATTCCTTGGACTGGTACCATTTGTTGACGACGAAGACAACCACCACGGCCCACAAAACCTCCACCCAAACATCATGCCCAACTTTGGTCAAATACGTCAGAATGGAGTCCTAGATAATTGGCCAGCGCCGCCGGGAGCCGAGAACGGTAATGATCATAATAGTGACGAGGACGAAAATGGAGAGCCATATCCCTTGCCTCGACATTTTCGACCTCGACTTCCTGTCGACGGTAGTGACTATGAACATTCAGCAGTGTCCATGATTGATGATATGAGTGTGTCCTTTGGCGGATATACATCTACCAATGCCTCTTGTTCAGATATCTCTGGACTTTGCGACATTGACGATAGCGAGATGAACCTCAGTGATGACAGTGACATTGATATCCACCCGGCTAAGTTTTCTAGTGCCCATCACCACACCCAGGTG

Transcript

pred2_37324.1

ATGGTTTCTATTGGTTATGTTCTTGAGGTTGAAGCAGTGGACAGTGGTTTCCCAACTCTTACAGGAACAGCAACACTGTCAATTGAGATTCTGGACGTTAACGATAGTCCACCTCGCTTTAGCCAGCCAGCATATTCAACGACAGTCCAGGAGGATCGTGAACATGGCTACAGCATAATCAAATTCGATGTAACAGATGATGACCTCAAACCTAACGGAGGCCCTTTCTCTTTTGATATAATTTCTGGTCTCGGCCGTGAAAAATTCCGTATTGACAACGATGGCACTCTACGCTCTTTCAGGGACCTTGATCAGAAAATCAAGGATAGATACGAGCTAACGGTTCGAGCCTACGACAATGGCAGTCCACCACTTTATTCCGACGCTACGGTTACTATTGAAGTCACAGAGGAAAGTACAGTCCCACCGGAAATTTCAAACTTAGAAATTTCCATCAACTCCTACCAAGACAAGTTCCCTGGTGGGATAATTGGCAAAGTTAGCGCTAGGGACGATGATATGCATGATACCCTAAAGTTCAAGATCGTCTCTCAGAATCTACACCTTTTTGACATCCACGAAGATGACGGTCGGATCATAGCCAAACCTGGCCTCGACGCTGGGCGTTATTTGATTAACGTCAGCGTGACAGATGGAAAATATTCCTCGTACGGTAAGGTGATGGTTGACGTTACCGTCATTACAGAGGATATGGTAAAGAACTCTGTAACAATTCGTCTGGGCAACGTCCAGCCGGACACATTCCTTAGGCGTCACCTCAGGGACTTCCTGAAAATCTTGAAGAACGAGATGTCTATCCGTAGCAGAGACATTGAAATCATTGGTCTCCAACCCGCTGATATGAGCATAGAGGCTCTGACCCGACAGAAGCGTTCCACGTCCGACGACTTGGACGTTTTGTTTGCAGTGAAGAAATCTCACAACGCGTACATGCGGGGCAACCTGCTGAGGAGAAGAGTGCTGAATGCAGCACCCAAAATCCAGACTGCCCTCCGCCTGAAGGTGCTCAAAGTCTTCGGCGACGTGTGCGAGAAAGATACGTGTGAGATTGGCACTTGTATAGGGCTTGTCGAGATTGATAAAGAACACCCTAGCGTGACGGAGATCGGTGGACGGAGTTTTGTATCGCTGAAACACCAACACACGTACGAATGCAAGTGTCAAGAAGAGAAGTGCATCTGGTACTTAGACCCTTGCATTAGCCACCAGTGTCCGCCTTATAAAGTATGCAAAGAATCTGATATGTCCGTAGCACAATGCGTGTGTCCAGAAGGCAAGACTGGAATCTACTGTGATGAAGATTCTCGGCCTGACTGTGCAGAAACAGGCTGTCGACACGATAACCGACCGATGACATTTGCTGGACGTAGCTACGCCCGATGGACTTTGGTGGACAAACATGGCTTCGAGAACCGTTTGAGTGTGTCAATGAAGATAAAAACACGACAGAAAAATGCAAACCTAATGTTTGCCAGTGGAACTGTCGACTACAGTATATTAGAGCTCTTCAACGGAATGGTACAATATAGATTTGAATGTGGAAGTGGGGTCGGCCGTGTCCAGCTCCCCCGCAAGATTAGTGACGGTGACTGGCATACGATCTTTGTGGAGCGTATGGGAAACACGGCCACCATCAACTTGGACGGACGTTATACGGCGTGGTCTAGCGCGCCCGGCGAGCATGATGTCCTGAACTTGGGCAGCAACAACGTCTACTTTGGAGCCGAAGTGGAGACCTTTCCTAACGGGTTCAGAAACATTGACAAAGGCTTCGAAGGTTGCATGGAAGACTTGCGGCTGCACAATATCCGACTGCCCTTCACTGACCGGAATGCAGTTGCCACTTCCCAAGAATTCCACAAAATTGAATTTAACTGCCGAGACAACGTTTGGGAAAAAGGTGACAGTGGTCCTTTATGTGAATTCGAATCCGATAAGTGTGCCCAAAACCCATGTAAAAATGGCGGCACATGTTACAATGGCCCAGGCTCCTATTTCTGCAACTGCAGTTCAGACACCAAGGGCACCCATTGCGAGGAAATTCTCTTACCAAACATTTCATCCAACCGATATGGGATCACCCAAAAAGAAATCATTATAATCATTGGTGCCGTTAGTGGTCTGTTTGTTATCGTCATCCTGTTGATAGGTGTCCGCTTTTGGTATCAAAAGAAGCAAGCACGGCGCCGCCCGACTCATTCACGCTCACGTATGGTTGACAACGTCATCTTGAACAGCGCTCATGATGAACTGAAGCAACACAAACTGAGCAACAACGAGCTGCACCTGCCGCAGAGATGCCCCAGCCCACAGCCGCCTCCTGTACCGAACCGCCCTGCTTCCTACACCCCGAGCAACCACGATTCACTGAACACGCTCAACAACTTCGACGCAGTTCGCAACTATGGCAGCGCGGCTGATCAGCTGGAGAATCCGCACAATATTCCGGTGTATACGTTTGACCATTTGCAGACATTCAGTCCATACCCACGAAATTGCGCAAGCATTGCCCCTTCCCTGCCTCCGCCACCACCCTCCAACTCTGCATCAGACACAGATTCTATACAGAAGCCAAACTGGGACCTTGATTATCCAAATATACTGGAGAACTATCCAGAATCTGAAAGAAAGAGTTCTGTGAACCTGGCCAAGGCGATGCCTACAGCTGACCCATCCCCCCGTTTCAAAAATGTCTTTTCGGGAAGGGACACCACCTCCTTTAGCAGTTTACCGATCTCAGAGTCTGAGGAAGATCTACCAGGCTATCACTGGGACACGTCAGATTGGGCGCCCCATTCTGCATTACCCAACATCAGCGAGCTCCCAGTGAAAGAGGTCCTCGACTCGCCGAGTTCATCACCGCAGAGTAATGATTCAAACACACATGTCGACCCACCCAACATGGAAGATGTGAATGACGCTGAAATGGACGACCCGGAGAACGACTCTGAATACGTTGGAGATTCGGAATGCACCGAAAACTTTGACGACGAGGAAGAAAATGAAGATCCGAATGCTGGCTACCACCCGGCTCCTAACTTCCAGCAATTCCTTGGACTGGTACCATTTGTTGACGACGAAGACAACCACCACGGCCCACAAAACCTCCACCCAAACATCATGCCCAACTTTGGTCAAATACGTCAGAATGGAGTCCTAGATAATTGGCCAGCGCCGCCGGGAGCCGAGAACGGTAATGATCATAATAGTGACGAGGACGAAAATGGAGAGCCATATCCCTTGCCTCGACATTTTCGACCTCGACTTCCTGTCGACGGTAGTGACTATGAACAttcagcagtgTCCATGATTGATGATATGAGTGTGTCCTTTGGCGGATATACATCTACCAATGCCTCTTGTTCAGATATCTCTGGACTTTGCGACATTGACGATAGCGAGATGAACCTCAGTGATGACAGTGACATTGATATCCACCCGGCTAAGTTTTCTAGTGCCCATCACCACACCCAGGTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR050971	Family	Cadherin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24025	DESMOGLEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-