Gene detail

Detailed information of pred2_36888.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_36888.1	UNCHARACTERIZED	Sc3x4tf_127	11633312	11579927	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_36888.1

ATGGATACATCGAAAATGTCCTTGGTAGACCCAGCTTGGGAATACTTGGACCCTACGCCAGATATATTCGCAATGTTTCAAGAGTTTGATAAAACCTTCTTCGGTTGTACAATGGGTCGTGTTGAACTGAAGTGGAGCAAACGAATGACATCTTGTGCTGGTCTCATGGCTCCACTAGAAGGCAGAGGTGGTGCTTGCTCTATCAGATTGAGTGAACCCCTACTCAAACTCAGGCCTCGCAAAGACTTGGTTCAAACTCTACTGCATGAAATGATTCATGCTCATCTACATGTCACAAGAAACCGGGAAAGTGACCCTCATGGACCCAAGTTCAAAGAACTTATGCATAGAATCAACAAAATTGCTGGCACGAATATAACTGTATACCACAATTTTCATGATGAAGTAAATCTTCACAAGCAGCATTGGTGGCGCTGCAATGGACCATGTCGGAATTGGAAACCCTATTATGGTTGGGTAAAGCGAGCTACAAACCGAGCACCAGCCAAGAATGATTTTTGGTGGGCCCAGCACCAGCAGACTTGTGGGGGCCAGTATATCAAAGTAAAAGAACCTGAAGGCTATAGTAAGAAAAAAGAAGCTCAGTTAAAAAAAAGTCTTGGTAAGAATGGAAATTTATTATCAAAGATCAAAAAGAAATACAGTGTGAACCATCCTCCTGTGTCAACAGTGAGCACACCAAAAACAGTGAGCACACCAAAACTCACAGACATGTGGAAGAAAAGGCAAACGAATGTAAATTCCCCAAAGACTCCTCTAAAGACCAACAATTCTAGCTCACCGTTCCAGACGAAAAGCTCTCCCCCAAACAGCAAAAACATCAAAAGTCCATCCAGTAGCTTCTCTAGTAACGGTAATGGTAATGGTAATGGTGACACTCTTGGAACAAATGGCAGCCACCACTCGATAAACAGCATTTTGGGACAACTGCACAAAGAAAATATGGAACGAAGACGGCGGCTTTCAGGAAAGAATGACCATTCTAGGATTGTCCATGAAACAAAAAGCAAGTCTCAAGAAAACCATATAGAAAGAAAACCAATATATGTAGATCTAACAGAAAGCCCACTTTCACAGCCTGTATCATCAAAGAACAATCAGAATTCCTCTTTAATCTCAAAGAAACCAAACTCCCTTATCAATCAAGTTACTCAAAATTCTGAGCGAAAGTCACTCTCCAAAGTTCCTCAGTCCTCCGTCAGAGATTTTGGCAAAGCACTTAAAGACAGGAATCTTCATGAGAACAAAAGAAACTTTTTAACCAATAAGGTTGATTTTATTGAGAAGAATGTGGAACTTTCATTCAAATCCACTGATAAACAGGCGAAATCTCATCTTTCTTTCTCTAATGTTTCACCAGAGAAGAAACATTCAAAAGTGTCTCACACTGAACCCAATACATCCTCCAAACATCTTTCTTCTGTATCTCCTGAGAAAAAACACACCATTACAAAATCACATTCTTCCACTGATAAAACATTCACCTCATCACCCGATGACCAACAAACACGAGAAGAAAAAAAGAAAAAATTAAAATTACTCGAACAATTATTTGGAGATGACTCTGATAGTGAGATAGAAACTGACAAAATGAACAGTCAAAAGTTGAAATATCCAGATTCTTCTTCTTCTTCTTCTTCTTCGACCTTTACATCTCGAAATGCCACAAAAACTCCACAAAAATCTCCATCTGGATCCAGCCTTAAAAAGTCTACTTCCAAACAAACCCAATCAAATCGTTTAGAAAATTATTTCACTTCTCCAATCAAAAAATCTTCTGAGGACGATCCCATTATTATCGACAACGATATGGCCTCATCAGGCAGGATATCTGAATCTCCAGCGTCCAAAACTATGGTTCCTTGTCCAATCTGTCAGAAAAAAATTGCTCAGAGACTTTTGTTAAATAACCATGGGATTTTGTCCATTGATGATAATCCAAAGGTTTTGCAAGAACGATTTCAGCGTGTCAATTTTGAAAATACACTAAAGAATCGTAACCTCTACCAGCAACACATGATTAGTGCTTGCCCAGATCACATCTCTGGAGTCATCATATCAAATGAAACTTTATTTCAAAATACAACTGACAAAGTTTCTTTCATAAAGTATATAAAAGGCAGAGGAAAGTTGCTTGGAATTAAGATGGATCGTGGAATTGTACCGTTAAATAGTACCAATGAAGAATATATCACCCAAGTTTATGATGTAATTGCTCGTCAACCAATTCTTCAGTGTCATACTGACCCAAAATTAGCTTTGCACTCAATTTGGCTTTACACCCGCTGTGTAACTGTTTGTGACACTTGTTGGTACAAAAGGTTTATTTATTTGTATAGCATGGCATTTGTTCTTGTTGGTCTTGCCTATTGTGTCCAGCCTCAACTCTCTTTAAAAACTTATCAAGAGATTTCTGCACAGTTATTTAAAAAGAATTTCATAAATCTTCTTGTAGCAGACAAGACCTTTGTGAACAGCTGCAGACACTTTTGTCTTGATGGTTTTGCGGAAAGATGTGCCATTTACAAAAGTACAGGCGTTTCATTTGCCAAATGGCATTGTATCTTTAAAGTCAGAAAGTACACACCATCCGTTTTAGCCATCCAAGAGAACTGCAACATTTTGGCCCGTTACGCCTCGATTTGTCAGCAGAATGGAGTCCTACCCATGATTATGGTAGAAGTGGCATCAGATGGAGACCATGATTTGATGACAGCTCAGAAAACTTTGGAAATGATTCTTGCTTCCCTTTTCAAAATCCTTCATGAACATCATATTTACTTAGAAGGAATGATACTCAGCCCTAATATCGTAATTGCTGGTCAGAGTTGTAACCAGAAATTCACTACTGAAGATATTGCCATGGCAACCATCACTGCTCTCTTGCGAACAGTACCTCTCGCTGTTCCTGGCATAGCTTTCATGTCTGGAAACATGAATGAAGCAGATGCAGTATTTATTTTGAACAATGTTTGTAAATCCTTACATAAGAAGTATTGGGTTATGACTTTCTGTTTTGGTTATGTAATCCAAAGGTGCTTCCTGAGAGCATGGAAAGGGGAGCATGAAAACTTGAAAATGGCACAAAAACTTCTTGCAGATAGATTCAAAGATGTTGGAAAAGCAGTTAAAGGAGAATATCCTCCACAAAAAAAGAAGAAAGTAGAAAAGAAACCTGAGAAAAAACCTACTGCCAAATCTTCCGGAAGTGGTGACCAGGAAAATATGTTCCAGTTGTCTAAAATGAGATATGCGAGTGTCAGTGAATTCCGAGGCAAAGTGATGGTTGGAATACGGGAATATTATGAAGCTGATGGCGAAATGAAACCCGGCAGAAAAGGAATCAGTTTGAATTTAGAACAGTGGAATCGGTTGAAGGAATGTATTTCTGATATTGATGAGGCTATCGAACAATAT

Transcript

pred2_36888.1

ATGGATACATCGAAAATGTCCTTGGTAGACCCAGCTTGGGAATACTTGGACCCTACGCCAGATATATTCGCAATGTTTCAAGAGTTTGATAAAACCTTCTTCGGTTGTACAATGGGTCGTGTTGAACTGAAGTGGAGCAAACGAATGACATCTTGTGCTGGTCTCATGGCTCCACTAGAAGGCAGAGGTGGTGCTTGCTCTATCAGATTGAGTGAACCCCTACTCAAACTCAGGCCTCGCAAAGACTTGGTTCAAACTCTACTGCATGAAATGATTCATGCTCATCTACATGTCACAAGAAACCGGGAAAGTGACCCTCATGGACCCAAGTTCAAAGAACTTATGCATAGAATCAACAAAATTGCTGGCACGAATATAACTGTATACCACAATTTTCATGATGAAGTAAATCTTCACAAGCAGCATTGGTGGCGCTGCAATGGACCATGTCGGAATTGGAAACCCTATTATGGTTGGGTAAAGCGAGCTACAAACCGAGCACCAGCCAAGAATGATTTTTGGTGGGCCCAGCACCAGCAGACTTGTGGGGGCCAGTATATCAAAGTAAAAGAACCTGAAGGCTATAGTAAGAAAAAAGAAGCTCAGTTAAAAAAAAGTCTTGGTAAGAATGGAAATTTATTATCAAAGATCAAAAAGAAATACAGTGTGAACCATCCTCCTGTGTCAACAGTGAGCACACCAAAAACAGTGAGCACACCAAAACTCACAGACATGTGGAAGAAAAGGCAAACGAATGTAAATTCCCCAAAGACTCCTCTAAAGACCAACAATTCTAGCTCACCGTTCCAGACGAAAAGCTCTCCCCCAAACAGCAAAAACATCAAAAGTCCATCCAGTAGCTTCTCTAGTAACGGTAATGGTAATGGTAATGGTGACACTCTTGGAACAAATGGCAGCCACCACTCGATAAACAGCATTTTGGGACAACTGCACAAAGAAAATATGGAACGAAGACGGCGGCTTTCAGGAAAGAATGACCATTCTAGGATTGTCCATGAAACAAAAAGCAAGTCTCAAGAAAACCATATAGAAAGAAAACCAATATATGTAGATCTAACAGAAAGCCCACTTTCACAGCCTGTATCATCAAAGAACAATCAGAATTCCTCTTTAATCTCAAAGAAACCAAACTCCCTTATCAATCAAGTTACTCAAAATTCTGAGCGAAAGTCACTCTCCAAAGTTCCTCAGTCCTCCGTCAGAGATTTTGGCAAAGCACTTAAAGACAGGAATCTTCATGAGAACAAAAGAAACTTTTTAACCAATAAGGTTGATTTTATTGAGAAGAATGTGGAACTTTCATTCAAATCCACTGATAAACAGGCGAAATCTCATCTTTCTTTCTCTAATGTTTCACCAGAGAAGAAACATTCAAAAGTGTCTCACACTGAACCCAATACATCCTCCAAACATCTTTCTTCTGTATCTCCTGAGAAAAAACACACCATTACAAAATCACATTCTTCCACTGATAAAACATTCACCTCATCACCCGATGACCAACAAACACGAGAAGAAAAAAAGAAAAAATTAAAATTACTCGAACAATTATTTGGAGATGACTCTGATAGTGAGATAGAAACTGACAAAATGAACAGTCAAAAGTTGAAATATCCAGATTCTTCTTCTTCTTCTTCTTCTTCGACCTTTACATCTCGAAATGCCACAAAAACTCCACAAAAATCTCCATCTGGATCCAGCCTTAAAAAGTCTACTTCCAAACAAACCCAATCAAATCGTTTAGAAAATTATTTCACTTCTCCAATCAAAAAATCTTCTGAGGACGATCCCATTATTATCGACAACGATATGGCCTCATCAGGCAGGATATCTGAATCTCCAGCGTCCAAAACTATGGTTCCTTGTCCAATCTGTCAGAAAAAAATTGCTCAGAGACTTTTGTTAAATAACCATGGGATTTTGTCCATTGATGATAATCCAAAGGTTTTGCAAGAACGATTTCAGCGTGTCAATTTTGAAAATACACTAAAGAATCGTAACCTCTACCAGCAACACATGATTAGTGCTTGCCCAGATCACATCTCTGGAGTCATCATATCAAATGAAACTTTATTTCAAAATACAACTGACAAAGTTTCTTTCATAAAGTATATAAAAGGCAGAGGAAAGTTGCTTGGAATTAAGATGGATCGTGGAATTGTACCGTTAAATAGTACCAATGAAGAATATATCACCCAAGTTTATGATGTAATTGCTCGTCAACCAATTCTTCAGTGTCATACTGACCCAAAATTAGCTTTGCACTCAATTTGGCTTTACACCCGCTGTGTAACTGTTTGTGACACTTGTTGGTACAAAAGGTTTATTTATTTGTATAGCATGGCATTtgttcttgttggtcttgcctattgtgtccagcctcaactctctttaaaaacttatcaagaGATTTCTGCACAGTTATTTAAAAAGAATTTCATAAATCTTCTTGTAGCAGACAAGACCTTTGTGAACAGCTGCAGACACTTTTGTCTTGATGGTTTTGCGGAAAGATGTGCCATTTACAAAAGTACAGGCGTTTCATTTGCCAAATGGCATTGTATCTTTAAAGTCAGAAAGTACACACCATCCGTTTTAGCCATCCAAGAGAACTGCAACATTTTGGCCCGTTACGCCTCGATTTGTCAGCAGAATGGAGTCCTACCCATGATTATGGTAGAAGTGGCATCAGATGGAGACCATGATTTGATGACAGCTCAGAAAACTTTGGAAATGATTCTTGCTTCCCTTTTCAAAATCCTTCATGAACATCATATTTACTTAGAAGGAATGATACTCAGCCCTAATATCGTAATTGCTGGTCAGAGTTGTAACCAGAAATTCACTACTGAAGATATTGCCATGGCAACCATCACTGCTCTCTTGCGAACAGTACCTCTCGCTGTTCCTGGCATAGCTTTCATGTCTGGAAACATGAATGAAGCAGATGCAGTATTTATTTTGAACAATGTTTGTAAATCCTTACATAAGAAGTATTGGGTTATGACTTTCTGTTTTGGTTATGTAATCCAAAGGTGCTTCCTGAGAGCATGGAAAGGGGAGCATGAAAACTTGAAAATGGCACAAAAACTTCTTGCAGATAGATTCAAAGATGTTGGAAAAGCAGTTAAAGGAGAATATCCTCCACAAAAAAAGAAGAAAGTAGAAAAGAAACCTGAGAAAAAACCTACTGCCAAATCTTCCGGAAGTGGTGACCAGGAAAATATGTTCCAGTTGTCTAAAATGAGATATGCGAGTGTCAGTGAATTCCGAGGCAAAGTGATGGTTGGAATACGGGAATATTATGAAGCTGATGGCGAAATGAAACCCGGCAGAAAAGGAATCAGTTTGAATTTAGAACAGTGGAATCGGTTGAAGGAATGTATTTCTGATATTGATGAGGCTATCGAACAATATTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	PC4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00274	Glycolytic	Fructose-bisphosphate aldolase class-I	Domain	Interproscan
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan
PF10263	SprT-like	SprT-like family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000741	Family	Fructose-bisphosphate aldolase, class-I	Interproscan
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan
IPR006640	Domain	SprT-like	Interproscan
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR044245	Family	SprT-like domain-containing protein Spartan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21220	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0004332	Molecular Function	fructose-bisphosphate aldolase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006096	Biological Process	glycolytic process	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-