Gene detail

Detailed information of pred2_33837.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_33837.1	L-FUCOSE KINASE	Sc3x4tf_185	4295588	4364440	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_33837.1

ATGTCTAGCCAATCTGGATCAATCACGTGGACAGCCATTGTATTGACCTGTTCAGACAAGCAATGGTCACAGTCTCTTCAACAAGAATTTGAATTGAGACAAGCCAAAGGTCTGGTTGACAAAGAAACCATTTTATTGACAGTCGAAGATCCTCAGTCTCATGTGGGCAGTGGAGGTGCCACTATCAATGCACTGCTTGCCATTACAGAACATATCAGTGCCTGTAAAGGATATACTGTGATCAATGCCGATGTCCTGAACAATGCATACATCCTTATCCTCCATAGCCCTGACTCTAACCGGAAAAGCGCTGGAGGTGTACGCATGACTTTCCCCGACCAATCCCTGGACTTTGAGATGGTGAAGGAAGCCCTGTTGAGAGCCTTTGACCTGACGGCTGGGGTTTTCCGTAAAAGGTTTAGGGCAGGAAGACCTGAGGAGGAGACCCCAAGAGAGTTTGCAGCACGCCTAGGGGGATACCTGAAAAAATGGATGGAGCTAAGCAGGGTGCACGAGCTTGACCAGCTATTGGACCTACTAATAAGAGAACAATTCCTCGAAGGAGTAGCACCGGAAGTGTCTACATTTATACGAGAAGGTGACCCAAGAAACCTGGAAGAGGTGGGAAAGGTTGCAGAAGACTGTGAGTGGGCCAAGAAAATCCTGGCCCAGGCCCAGAGAACTCCGAAACGACAATTCGTCCACACCAGCAAGAGGTATACACCGCCCAGGAAACGGACCCGCCAGCGCGTCCAGAAACAGCTGTTGCTGTGCTGGATGAGACTGACCAACCAGATGGAGCTGACTGGGGACCCATCCTACCCGCAGGCAAAGCGAAGGAAGGGATCTCTGACATCCGGACCAGTGGAACCTTGGAACAATCCCAGTAACAGCAACTCAGAACCCTCCTACAAAGGCAAGCGGACTACTTCACAGACCTACCAGGGCTGTGGTCGGACATACACATACAGCTCCTGTCGACATGCCTTCCTCCCATTACCAGCCAAGTATTATCAGCCTAGCTATGATTCCCTTGTGTGTTTGGTGGATATCACTTTAGACACCATAACTAAAAAAATAGCAAATCAAGCTCCTCCAGGCATATGGGTAACTAGTACTGACATGATGCTATCTGTCCGAGAGGATGCAGTCATCAAATGGCCAAGTGCAAAAGCAGACGTGTATGTTGTTACTACTACTAGTAGTCGAACTTACTGTAAAGAACATGGCGTTTTCAAAATTGATAAGCAGGGTTACATAGAAGATATCAAATATCAAGCAGATGATACAAGTCTCTCGTCCTGCATGCAGTCATCTGGGGATTGTCTGATTGTGTGTGGCATAGTCTATTTTAACAAGATAGTTGCTGAAAAAATGCTGTCTTTTCACGTAAAACCACCTATTGACAGTTGTACCTATATTGGGTTGGACAGTGGACAAAAACCAAAAGAGTTGTCTCTTTTCTTTGACGTGCTACTCCCGATGGCCACAGGTGTGACTGAACATGATTTTACTTCAAAACATTCAACAAATCTCATGAAAGAAATCAGGCAGATTTTGTGGGATGAGCTTCATGATTTCAAAATCTCTCCTGTTATAATTGACGCAGGCCAGTACCATTATCTGGCTACTTCTTCCCTTGAATTCCTCTCTCAGATTATTCTCTGTCCGCTTAAATACAACACATCCAAGTCATTTATCTGGGAACCAATTACACATTCTTCATTGGATGACAATGCAGATGTGTCAGAAGGCAGTGTGGTCATCAATAGCATTCTTCAGGGTCAAGTGACCATTGGTCCTGGTTCTGTGGTGACCAATTGTTATATGGATGGCTGCATCCAGGTTGGAAAGCAGTCCATTTGTAGTGGACTTAAAATCGAACTTAATGAACGAAAGAAAGTTAAGTTTGCTGACTCTATGGGAATCCAGGGATTCAATATCCATTTAAAGACTTTGCAGACAAGCAAATATGTGTTAACTGTCCATGGAACTCGGGATCAACTTATGATTCCAATAACAAATGAAGACGCAACGTTTTGCAACCAGAAATGGAAAACATTCCTCCGAAATACTGGCATCACTGAAGACGACCTTTGTCATGCAAATGAAAAACTTTCACAGAAAACTCTCATGGAAACTCAACTATTTCCTGTTTTTCACCCAACTGAAAATGTCGGCCTGAAGGAGATACTTTGGCTTCAGGGTCAACTAAAAGATGATACTGGAGACCTTTTGAAAAGATGGAGAGAATCCTGGCGTTTGTCGCTGTCAGAAATTCTTAAATTAGTGGATTTTAATAAAGAATTTTCTGTCAGAAGAGAACAGTTTTATAACATCTGTGAACTTCATGTAAAGGACACACTTCTCCAGCAGAAAGATCAAGGTTTAAGACCTATTTACCAGAGCATTGTCCTTGAGCCATCAGAATTTTCTGAACATCTTCTTAACACTTTAGACGAGGTGGCTCTGAAATGCAGTGAATCTCCAGCCAATGCTGCCAGGACATTGGCCAATATTGCTGACCTGTTGGGCTGTATGGCCAAGGGGAAAGGTGGTCTGCGTAGTGGACCTGCTGCCAATATCGCTTGGAACAAAGCATTCAGTCTCCTTGAAATGAATCAGATTTCTGCAGGTGTGAAAGCTTTAGCAAAAGTAAGAAATGACTGGCTGCATCGGGCAGACTTATTGATACGAGCATCAAGACATTATGAAGGAGCTGCACAGATTTTAATTCGGCAAGTTGTAATGACTGGTAAGAAATTTGTGGAATTTACAAGTTGCACTTTACCAGATTACGATCATTGGATCAGGGCGGAATGTCCTGCTCGTTTGGATTTGAGCGGAGGATGGTCAGACACTCCACCCATAACCTATGAGCATGGTGGAGCTGTTACAGGTGTTTCTATTACTATCAATGGAAAGAAACCAATTGGGGCAAAAGTTAAAAGAATTAAAAGCCCTGTGATTGTTTTGGTATCTGGAGCCAATGAATTGGTCATTCAGAACCTGTCGGACATGGAGGACTACACCAATCCATACTCATCAGGGGCCTTAGTCAAAGGAGCTTTTGTTTGTACTGAGACTATCAGTCTATCTTCTCCCATTTCATTAAAAGAACAATTAATGTCTAAATATCAAGGTGGCTTTGAGGTTCATACTTGGACTGACCTTCCACAGGGATCAGGCTTAGGTACCAGCAGTATTTTGGCAGGGGCAGTGATAGCAGCCATTTGTTCTGCTTCAGGGAAAAAAGTTGATTCAAGAAGTCTTATATATTTGGTAATCTACCTGGAACAGCTTCTAACAACTGGTGGTGGCTGGCAAGACCAAGTGGCTGGACTGCTGGGAGGAGTAACAACAGGCAAGTCGGCTGCTGAAATCCCTTTATTCATTCATACGATGCAACATTCAGTGACTCCTGCTATAATTGAAGAATTTAATAATCTTCTGATTTTAATCTACACTGGAAAGACACGGTTGGCCCGAAATTTGCTTCAGAATGTTGTTCGTGACTGGTACGCCCGGAACCAAGATATTCTTTGCACTGTTGACCAACTGAAGCAATTAGCTCATTCCTGTTCTGATGCCTTTCAAGATGGTGATCTGCCACTGGTCGGAGAATGTGTGGACAAATATTGGGAACTGAAAAAGAAAATGGCTCCTGGTTGTGAACCTGCAGCTGTAAAAAGTCTGATGGAGAAACTCCGTCCAAATGTCTTGGGAATGTCTCTGGCCGGCGCTGGTGGGGGAGGGTTCTTTTATGCCATTGCCAAAGATTCTTCTCTCAAAATTCAACTGAATGAAATAATTTCCCAAATCCCGGTAAGTCTTTTTTTAGCTGAAGCC

Transcript

pred2_33837.1

ATGTCTAGCCAATCTGGATCAATCACGTGGACAGCCATTGTATTGACCTGTTCAGACAAGCAATGGTCACAGTCTCTTCAACAAGAATTTGAATTGAGACAAGCCAAAGGTCTGGTTGACAAAGAAACCATTTTATTGACAGTCGAAGATCCTCAGTCTCATGTGGGCAGTGGAGGTGCCACTATCAATGCACTGCTTGCCATTACAGAACATATCAGTGCCTGTAAAGGATATACTGTGATCAATGCCGATGTCCTGAACAATGCATACATCCTTATCCTCCATAGCcctgactctaaccggaaaagcgctggaggtgtacgcatgactttccccgaccaatccctggactttgagatggtgaaggaagccctgttgagagcctttgacctgacggctggggttttccgtaaaaggtttagggcaggaagACCTGAGGAGGAGACCCCAAGAGAGTTTGCAGCACGCCTAGGGGGATACCTGAAAAAATGGATGGAGCTAAGCAGGGTGCACGAGCTTGACCAGCTATTGGACCTACTAATAAGAGAACAATTCCTCGAAGGAGTAGCACCGGAAGTGTCTACATTTATACGAGAAGGTGACCCAAGAAACCTGGAAGAGGTGGGAAAGGTTGCAGAAGACTGTGAGTGGGCCAAGAAAATCCTGGCCCAGGCCCAGAGAACTCCGAAACGACAATTCGTCCACACCAGCAAGAGgtatacaccgcccaggaaacggacccgccagcgcgtccagaaacagctgttgctgtgctggatgagactgaccaaccagatggagctgactggggacccatcctacccgcaggcaaagcgaaggaagggatCTCTGACATCCGGACCAGTGGAACCTTGGAACAATCCCAGTAACAGCAACTCAGAACCCTCCTACAAAGGCAAGCGGACTACTTCACAGACCTACCAGGGCTGTGGTCGGACATACACATACAGCTCCTGTCGACATGCCTTCCTCCCATTACCAGCCAAGTATTATCAGCCTAGCTATGATTCCCTTGTGTGTTTGGTGGATATCACTTTAGACACCATAACTAAAAAAATAGCAAATCAAGCTCCTCCAGGCATATGGGTAACTAGTACTGACATGATGCTATCTGTCCGAGAGGATGCAGTCATCAAATGGCCAAGTGCAAAAGCAGACGTGTATGTTGTTACTACTACTAGTAGTCGAACTTACTGTAAAGAACATGGCGTTTTCAAAATTGATAAGCAGGGTTACATAGAAGATATCAAATATCAAGCAGATGATACAAGTCTCTCGTCCTGCATGCAGTCATCTGGGGATTGTCTGATTGTGTGTGGCATAGTCTATTTTAACAAGATAGTTGCTGAAAAAATGCTGTCTTTTCACGTAAAACCACCTATTGACAGTTGTACCTATATTGGGTTGGACAGTGGACAAAAACCAAAAGAGTTGTCTCTTTTCTTTGACGTGCTACTCCCGATGGCCACAGGTGTGACTGAACATGATTTTACTTCAAAACATTCAACAAATCTCATGAAAGAAATCAGGCAGATTTTGTGGGATGAGCTTCATGATTTCAAAATCTCTCCTGTTATAATTGACGCAGGCCAGTACCATTATCTGGCTACTTCTTCCCTTGAATTCCTCTCTCAGATTATTCTCTGTCCGCTTAAATACAACACATCCAAGTCATTTATCTGGGAACCAATTACACATTCTTCATTGGATGACAATGCAGATGTGTCAGAAGGCAGTGTGGTCATCAATAGCATTCTTCAGGGTCAAGTGACCATTGGTCCTGGTTCTGTGGTGACCAATTGTTATATGGATGGCTGCATCCAGGTTGGAAAGCAGTCCATTTGTAGTGGACTTAAAATCGAACTTAATGAACGAAAGAAAGTTAAGTTTGCTGACTCTATGGGAATCCAGGGATTCAATATCCATTTAAAGACTTTGCAGACAAGCAAATATGTGTTAACTGTCCATGGAACTCGGGATCAACTTATGATTCCAATAACAAATGAAGACGCAACGTTTTGCAACCAGAAATGGAAAACATTCCTCCGAAATACTGGCATCACTGAAGACGACCTTTGTCATGCAAATGAAAAACTTTCACAGAAAACTCTCATGGAAACTCAACTATTTCCTGTTTTTCACCCAACTGAAAATGTCGGCCTGAAGGAGATACTTTGGCTTCAGGGTCAACTAAAAGATGATACTGGAGACCTTTTGAAAAGATGGAGAGAATCCTGGCGTTTGTCGCTGTCAGAAATTCTTAAATTAGTGGATTTTAATAAAGAATTTTCTGTCAGAAGAGAACAGTTTTATAACATCTGTGAACTTCATGTAAAGGACACACTTCTCCAGCAGAAAGATCAAGGTTTAAGACCTATTTACCAGAGCATTGTCCTTGAGCCATCAGAATTTTCTGAACATCTTCTTAACACTTTAGACGAGGTGGCTCTGAAATGCAGTGAATCTCCAGCCAATGCTGCCAGGACATTGGCCAATATTGCTGACCTGTTGGGCTGTATGGCCAAGGGGAAAGGTGGTCTGCGTAGTGGACCTGCTGCCAATATCGCTTGGAACAAAGCATTCAGTCTCCTTGAAATGAATCAGATTTCTGCAGGTGTGAAAGCTTTAGCAAAAGTAAGAAATGACTGGCTGCATCGGGCAGACTTATTGATACGAGCATCAAGACATTATGAAGGAGCTGCACAGATTTTAATTCGGCAAGTTGTAATGACTGGTAAGAAATTTGTGGAATTTACAAGTTGCACTTTACCAGATTACGATCATTGGATCAGGGCGGAATGTCCTGCTCGTTTGGATTTGAGCGGAGGATGGTCAGACACTCCACCCATAACCTATGAGCATGGTGGAGCTGTTACAGGTGTTTCTATTACTATCAATGGAAAGAAACCAATTGGGGCAAAAGTTAAAAGAATTAAAAGCCCTGTGATTGTTTTGGTATCTGGAGCCAATGAATTGGTCATTCAGAACCTGTCGGACATGGAGGACTACACCAATCCATACTCATCAGGGGCCTTAGTCAAAGGAGCTTTTGTTTGTACTGAGACTATCAGTCTATCTTCTCCCATTTCATTAAAAGAACAATTAATGTCTAAATATCAAGGTGGCTTTGAGGTTCATACTTGGACTGACCTTCCACAGGGATCAGGCTTAGGTACCAGCAGTATTTTGGCAGGGGCAGTGATAGCAGCCATTTGTTCTGCTTCAGGGAAAAAAGTTGATTCAAGAAGTCTTATATATTTGGTAATCTACCTGGAACAGCTTCTAACAACTGGTGGTGGCTGGCAAGACCAAGTGGCTGGACTGCTGGGAGGAGTAACAACAGGCAAGTCGGCTGCTGAAATCCCTTTATTCATTCATACGATGCAACATTCAGTGACTCCTGCTATAATTGAAGAATTTAATAATCTTCTGATTTTAATCTACACTGGAAAGACACGGTTGGCCCGAAATTTGCTTCAGAATGTTGTTCGTGACTGGTACGCCCGGAACCAAGATATTCTTTGCACTGTTGACCAACTGAAGCAATTAGCTCATTCCTGTTCTGATGCCTTTCAAGATGGTGATCTGCCACTGGTCGGAGAATGTGTGGACAAATATTGGGAACTGAAAAAGAAAATGGCTCCTGGTTGTGAACCTGCAGCTGTAAAAAGTCTGATGGAGAAACTCCGTCCAAATGTCTTGGGAATGTCTCTGGCCGGCGCTGGTGGGGGAGGGTTCTTTTATGCCATTGCCAAAGATTCTTCTCTCAAAATTCAACTGAATGAAATAATTTCCCAAATCCCGGTAAGTCTTTTTTTAGCTGAAGCCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00288	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF07959	Fucokinase	L-fucokinase	Repeat	Interproscan
PF08544	GHMP_kinases_C	GHMP kinases C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003309	Domain	SCAN domain	Interproscan
IPR006204	Domain	GHMP kinase N-terminal domain	Interproscan
IPR011004	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR012887	Domain	L-fucokinase	Interproscan
IPR013750	Domain	GHMP kinase, C-terminal domain	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036554	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR052203	Family	GHMP Kinase-Related Enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32463	L-FUCOSE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016772	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0042352	Biological Process	GDP-L-fucose salvage	Interproscan
GO:0050201	Molecular Function	fucokinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-