Gene detail

Detailed information of pred2_33087.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_33087.1	GTP-BINDING PROTEIN HFLX	Sc3x4tf_7	4104572	4068659	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_33087.1

ATGACGATGATGGAATTTTTTGGTTGCAGTTTCATTGCTTTTGGGCCTCCATTAGCAATGTTCATCTTCACCATTGCTAAGAACCCGCTCCGTGTGATTGTCCTCATTGCCAGTAGTTTCTTCTGGTTGCTGTCTCTCTTGCTTTCTTCAATATTATGGTTTGCCCTGAAGCAAATCTGGAGTGGAAAGCAAGTTCGATATTCACTCATAGTTGGGCTGGTCTTCTCAGTGTTTTTTCAAGAACTTTTCCGTTATTTGTTTTATAAAATGTTACGTAAGGCAGATGAAGGTCTACAGCGAGTTAGTCAGCAAGGTCAGAACTCCAACATCGTTCCCAAAGACATGACTAACAAAAGCATCATGGCCTATGTATCTGGGCTTGGCTTTGGAATTATTTGTGGAGCTTTCTCATTGGTTAATGTACTAGCTGATATGATCGGACCTGGAACGGTTGGCATCAAAGGAGATTCACAGTACTTCTTCCTTGCATCAGCTTTCTTGACTTTGGCTTTTGTGTTTCTGCACACTTTCTGGGGAGTGATTTGTTTCATGGCCTGGGACAAAAAACGTTACCTGTTCGTAGTTATTGTCGTGGCTAGTCACATGTTCACTTCTTCCTTGACTTACCTAAATGGTTTGAATCCTGCCGATGCTCAGCAGAATTACCTAGCCACTATAATCACTGCATATATAGTGATGATAATGATGGGAACTCTGGCCTTCAAAGTATCGGGAGGATCATTTATGTCAATGAAACTCGCTTTGCGCAAATATCCCAAACAGGGTTTATTACGACTCTCTGGCCATTATTTCCATGTCAGTTCTCAAAGACTGTGTCGGCCCTTAGGAACCCTTGATTTCAACAAGAACCAACGTTATGGCTATGCTAACAATATTTTATGGCAGAAAAGTATTAAAGAGATACACAGAAATGGTCGGATGTTTTCAAATGAGTCTGATCAACAAATAAATTTCGATGACATTTCGTCAGATGAGCTGGAAGAATTATTGCGGTCTGACCCCAAGTACCAAGAATGTGTCTTAGAATATTACAACATTCCTAACACAGGCCAACGAATTTTCCTTGTTCAACCAGGTAAATATGCAGCTTCACACTCATCTTCTAAAGTTGTCAGCACCAAGAGGCCACACTCAATGCAAATCTTTGGCAAAGGGAACTTTGAAGAACTCACAGAACAGATAAGAACATGTCCAGCAGTTTCTGCGATCTTTCTCAGCATTGAAATGTTAAATGGTCAACAATGGTCCTATTTGCAGAAGGTCTGGAATATCCCCGTTTATGACCGGTACACCATTATCATGCAGATTTTTAAGGAGCATGCCAAAACTAAGGAAGCCAAGCTACAAGTAGCACTTGCTGAAGTGCCATACATCAGGTCTCGGTTGGTGTCTATCCATAAAGATAGCCAGAATTATTCTCAAAGTGTGACCCAAAATATTAGCCGCCCTGGTGAGATTTACCTGGAACAAAGGTACAAGTTTCTACAGGTAAGAAGAAACATCATAAAAACGTTAGTAGGCAAAACAAGTCTTATAAAAGCCTTGACTAATGATGCTGACCTCCAACCTGTTGACCAACTCTTCGCCACTTTAGATGTGACTGCACACGCCGGAACTTTACCAAATCGCATGAAAGTCATCTACATGGACACTGTCGGCTTCATCTCGGATATTCCAACAAAACTTATTGATGCATTTGCAGCTACACTCGAGGATGCTATGATCGCTGATTTGTTGATCCATGTACGAGACATTAGCCACGACGACACTGTAGCTCAGAGTGCAAATGTCCACCAAACACTCACTTCAATGGTGTCTTCGGATCAACTCAAAAACATGATTGAAGTATGCAACAAAGTAGATTTGATACCTACTGGCCAAGAGTTCAAAACTAACACCCAAAATGCCCTCTTCACTAATGCTGTCAATGGTCAAGGCATAGCTGATCTCAAGACTTTTATCAAAGAAGCTATCCTGTCTACTACAGTGTGGAAAGAGAAGAAATTGCGTATCTTCCAAGGAAGTCCATTACTACAATGGTTGGAAAAAGAAGCCACCATTTTATCTGCTGTTCCAGATTCCAGCCAGGAGAACCTCATTGTCACTGTACTAATTACAGACTTAGTATATGCAAAACTCAAAGCAAAGTTCAGAAAACCAAGCAAAAAATATCCTAGGTTAGCAGAAAAA

Transcript

pred2_33087.1

ATGACGATGATGGAATTTTTTGGTTGCAGTTTCATTGCTTTTGGGCCTCCATTAGCAATGTTCATCTTCACCATTGCTAAGAACCCGCTCCGTGTGATTGTCCTCATTGCCAGTAGTTTCTTCTGGTTGCTGTCTCTCTTGCTTTCTTCAATATTATGGTTTGCCCTGAAGCAAATCTGGAGTGGAAAGCAAGTTCGATATTCACTCATAGTTGGGCTGGTCTTCTCAGTGTTTTTTCAAGAACTTTTCCGTTATTTGTTTTATAAAATGTTACGTAAGGCAGATGAAGGTCTACAGCGAGTTAGTCAGCAAGGTCAGAACTCCAACATCGTTCCCAAAGACATGACTAACAAAAGCATCATGGCCTATGTATCTGGGCTTGGCTTTGGAATTATTTGTGGAGCTTTCTCATTGGTTAATGTACTAGCTGATATGATCGGACCTGGAACGGTTGGCATCAAAGGAGATTCACAGTACTTCTTCCTTGCATCAGCTTTCTTGACTTTGGCTTTTGTGTTTCTGCACACTTTCTGGGGAGTGATTTGTTTCATGGCCTGGGACAAAAAACGTTACCTGTTCGTAGTTATTGTCGTGGCTAGTCACATGTTCACTTCTTCCTTGACTTACCTAAATGGTTTGAATCCTGCCGATGCTCAGCAGAATTACCTAGCCACTATAATCACTGCATATATAGTGATGATAATGATGGGAACTCTGGCCTTCAAAGTATCGGGAGGATCATTTATGTCAATGAAACTCGCTTTGCGCAAATATCCCAAACAGGGTTTATTACGACTCTCTGGCCATTATTTCCATGTCAGTTCTCAAAGACTGTGTCGGCCCTTAGGAACCCTTGATTTCAACAAGAACCAACGTTATGGCTATGCTAACAATATTTTATGGCAGAAAAGTATTAAAGAGATACACAGAAATGGTCGGATGTTTTCAAATGAGTCTGATCAACAAATAAATTTCGATGACATTTCGTCAGATGAGCTGGAAGAATTATTGCGGTCTGACCCCAAGTACCAAGAATGTGTCTTAGAATATTACAACATTCCTAACACAGGCCAACGAATTTTCCTTGTTCAACCAGGTAAATATGCAGCTTCACACTCATCTTCTAAAGTTGTCAGCACCAAGAGGCCACACTCAATGCAAATCTTTGGCAAAGGGAACTTTGAAGAACTCACAGAACAGATAAGAACATGTCCAGCAGTTTCTGCGATCTTTCTCAGCATTGAAATGTTAAATGGTCAACAATGGTCCTATTTGCAGAAGGTCTGGAATATCCCCGTTTATGACCGGTACACCATTATCATGCAGATTTTTAAGGAGCATGCCAAAACTAAGGAAGCCAAGCTACAAGTAGCACTTGCTGAAGTGCCATACATCAGGTCTCGGTTGGTGTCTATCCATAAAGATAGCCAGAATTATTCTCAAAGTGTGACCCAAAATATTAGCCGCCCTGGTGAGATTTACCTGGAACAAAGGTACAAGTTTCTACAGGTAAGAAGAAACATCATAAAAACGTTAGTAGGCAAAACAAGTCTTATAAAAGCCTTGACTAATGATGCTGACCTCCAACCTGTTGACCAACTCTTCGCCACTTTAGATGTGACTGCACACGCCGGAACTTTACCAAATCGCATGAAAGTCATCTACATGGACACTGTCGGCTTCATCTCGGATATTCCAACAAAACTTATTGATGCATTTGCAGCTACACTCGAGGATGCTATGATCGCTGATTTGTTGATCCATGTACGAGACATTAGCCACGACGACACTGTAGCTCAGAGTGCAAATGTCCACCAAACACTCACTTCAATGGTGTCTTCGGATCAACTCAAAAACATGATTGAAGTATGCAACAAAGTAGATTTGATACCTACTGGCCaagagttcaaaactaacacccaaaatgccctcttcactaatgctgtcAATGGTCAAGGCATAGCTGATCTCAAGACTTTTATCAAAGAAGCTATCCTGTCTACTACAGTGTGGAAAGAGAAGAAATTGCGTATCTTCCAAGGAAGTCCATTACTACAATGGTTGGAAAAAGAAGCCACCATTTTATCTGCTGTTCCAGATTCCAGCCAGGAGAACCTCATTGTCACTGTACTAATTACAGACTTAGTATATGCAAAACTCAAAGCAAAGTTCAGAAAACCAAGCAAAAAATATCCTAGGTTAGCAGAAAAATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF06105	Aph-1	Aph-1 protein	Family	Interproscan
PF13167	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan
PF16360	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR009294	Family	Gamma-secretase subunit Aph-1	Interproscan
IPR016496	Family	GTPase HflX	Interproscan
IPR025121	Domain	GTPase HflX, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030394	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR032305	Domain	GTP-binding protein, middle domain	Interproscan
IPR042108	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10229	GTP-BINDING PROTEIN HFLX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016485	Biological Process	protein processing	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0043085	Biological Process	positive regulation of catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-