Gene detail

Detailed information of pred2_32614.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_32614.1	PROTEIN CBG26694	Sc3x4tf_768	2850978	2834816	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_32614.1

ATGCTGCGAGACCTACTAAAGAAAGAAGCAACTTTTCTGTGGGAAGAATACTACAATCGATGCTTTAATAATCTCAAGACAAAGCTTAGCCAGCACACAACACTTGCATACTTCGACACAACCGAGATGCCAACCCTGAAAGGAATTGGAGCTGCACTGACGCAGAATGACAGACCGATTGCATATGCATCGAAATCTCTATCAGATACGGAGATTCGTTATGCTTGCATAGAGAGGGAACTCCTGGCAATTGTGTTTGGAGTTCAAAGATTCCACACTTACCTCTATGGCCGTCAATTCACGGTGATCACAAGCCACTGTGCACCCCCGAGACTACAATGCATGCTACTCAAGCTACAGGGATACCAAATGCCCATAGAATATAGACCTGGAAAAGAGATGACACTACCAGATACGCTAAGCCGTCTACCCAGTACCAGAAACAACGACACAGTTGACCTAGACGTTAGAGTCGACCTGGTGAGATTCAGCAAATACCGTCTGAAAGACTTACAAGAGGAAACCAGAAAATATCCTGTTCTCAACCAGTTACGTGAAGCCATAGTAATTGGATGGCCAGAATCAGTTAAGGAACTACCATATAAAATACGCTCCTACTGGCCTTACAGAGACGAGCCCTCAGTTAACGACGGTATCATATTGAAAGGATCAAGAATTTTGATTTCAGTCACCCAACGAAAGATTATATTGGACCAGCTCCACTACAGCCATCAAGGCATCGAGAAGACACGTCTTCGGGCTAGAGAAGCATTTGACCACGTAACATCATCTCCAAGGTTTCCACAATCAATTGGTTTTGTGGAGAGACAGATCCAAACTGTCAAGAAATTATTACGTAATGCAAAACAAGCGGGAACAGATGCTGATCTTGCAATGCTATGTCTACGAGCAACAACCATCAACCATAGCTTATCGAGCAAAGCTGAATTGCTCAACAATCGCATTATGAGATCTAGCCTTATTGCGAAGATACCAACTCCACGGTTCTCCAAACCCGATCATGTTCGTGAAGAGTTAAAATACCGTCAAGAACAGCAGAAAATATATCACGACAAAACGGCACATGATCTACCACAACTGGTACCAGGACAACAAGTGAGGGTACTAGACCAAAATGGACACTGGCAACCAGCTACTGTAATGACAAAATGTTTAGAACCAAGATCCTATATCATAAACGGCATCAAGGACTACTCTGATTTCATCCGGCTTCCCATGGCGGTAACCCCTTTGATGTGGAATACACCATGTGCGTCTGACTTCAGCTACAGTTCACGCAAAAGACGCAACAGAGTACAGATACGGGATAGTGGAACAGTCATACCTAAACATGTCCGGCTCAAGGACCCTATTGGAACAGTCACACCTAAACATGTTCGTTTCAAGAATCCCATTAACTCAACGGACCAACTACCGTCGTGTGAAGAAGGAGCTATTGGTGAAACCGACAGTCATAGCACGGATACACATATGCCAAGTGCTATACCCAAATTCACCAGCACGAACGGTGTCCCAGACCAAAGGACTCCAATAACAACCAAAAGTGTCCGTGAAGTAAAAAAAGATGTTGAGGAGATGGAGCTGCTGATGACAAAGGCCGAAAGGAGCCGTGTGAAGGATGTTCTCCAAATTGAGTTGCGGAAATTGCAGACTGAATTATCGGAAATAATGATAGATAATGATGAGACCAAAGCCAAGCCAAGTGTCAAGTCTCCCAAAAATCAGTGTCCAACCGTCAGTCTTACCAATTATGCTTGGGACCAGTCCAACAAGTATATGAAAATTTACATTGATCTCAAAAATATCCACCATCTTCCCAAAGAGAAAATTACATGTCATTTTGAAGAAAAGTCTCTGGATTTGACAGTTTTTGAATTAGACAACAAAAATTATCGGTTTGGTGTGAAAAGATTGGCTGGAACCATTGTACCTTCTGAAAGCTTTTTCAAGATAAAAACGGATAGTCTTGTCCTGATGATGATGAAAGAGAATACCATGAACTGGGAACACGTCACAGGGACGGCTGCTGAGAAAACAAAAGAGAAAACAAAAAAGAAACCAAGTCTTGATGATGGCAAAGATCCCAGTGATGGAATTATGGACATTCTGAAAAACATCTATGAAGAAGGTGATGATGATATGAAGAGAACCATTAACCAGGCTTGGTTTGAGTCCCGTAACAAGTCTTCTTCATTTGAT

Transcript

pred2_32614.1

ATGCTGCGAGACCTACTaaagaaagaaGCAACTTTTCTGTGGGAAGAATACTACAATCGATGCTTTAATAATCTCAAGACAAAGCTTAGCCAGCACACAACACTTGCATACTTCGACACAACCGAGATGCCAACCCTGAAAGGAATTGGAGCTGCACTGACGCAGAATGACAGACCGATTGCATATGCATCGAAATCTCTATCAGATACGGAGATTCGTTATGCTTGCATAGAGAGGGAACTcctggcaattgTGTTTGGAGTTCAAAGATTCCACACTTACCTCTATGGCCGTCAATTCACGGTGATCACAAGCCACTGTGCACCCCCGAGACTACAATGCATGCTACTCAAGCTACAGGGATACCAAATGCCCATAGAATATAGACCTGGAAAAGAGATGACACTACCAGATACgctaagccgtctacccagtaccagaaacaacgacaCAGTTGACCTAGACGTTAGAGTCGACCTGGTGAGATTCAGCAAATACCGTCTGAAAGACTTACAAGAGGAAACCAGAAAATATCctgttctcaaCCAGTTACGTGAAGCCATAGTAATTGGATGGCCAGAATCAGTTAAGGAACTACCATATAAAATACGCTCCTACTGGCCTTACAGAGACGAGCCCTCAGTTAACGACGGTATCATATTGAAAGGATCAAGAATTTTgatttcagtcacccaacgaaagattatattggaccagctccactacagccatcaaggcaTCGAGAAGACACGTCTTCGGGCTAGAGAAGCATTTGACCACGTAACATCATCTCCAAGGTTTCCACAATCAATTGGTTTTGTGGAGAGACagatccaaacTGTCAAGAAATTATTACGTAATGCAAAACAAGCGGGAACAGatgctgatctTGCAATGCTATGTCTACGAGCAACAACCATCAACCATAGCTTATCGAGCAAAGCTGAATTGCTCAACAATCGCATTATGAGATCTAGCCTTATTGCGAAGATACCAACTCCACGGTTCTCCAAACCCGATCATGTTCGTGAAGAGTTAAAATACCGTCAAgaacagcagaAAATATATCACGACAAAACGGCACATGATCTACCACAACTGGTACCAGGACAACAAGTGAGGGTACTAGACCAAAATGGacactggcaaCCAGCTACTGTAATGACAAAATGTTTAGAACCAAGATCCTATATCATAAAcggcatcaaggactactctGATTTCATCCGGCTTCCCATGGCGGTAACCCCTTTGATGTGGAATACACCATGTGCGTCTGACTTCAGCTACAGTTCACGCAAAAGACGCAACAGAGTACAGATACGGGATAGTGGAACAGTCATACCTAAACATGTCCGGCTCAAGGACCCTAttggaacagtcACACCTAAACATGTTCGTTTCAAGAATCCCATTAACTCAACGGACCAACTACCGTCGTGTGAAGAAGGAGCTATTGGTGAAACCGACAGTCATAGCACGGATACACATATGCCAAGTGCTATACCCAAATTCACCAGCAcgaacggtgtcCCAGACCAAAGGACTCCAATAACAACCAAAAGTGTCCGTGAAGTAAAAAAAGATGTTGAGGAGATGGAGCTGCTGATGACAAAGGCCGAAAGGAGCCGTGTGAAGGATGTTCTCCAAATTGAGTTGCGGAAATTGCAGACTGAATTATCGGAAATAATGATAGATAATGATGAGACCAAAGCCAAGCCAAGTGTCAAGTCTCCCAAAAATCAGTGTCCAACCGTCAGTCTTACCAATTATGCTTGGGACCAGTCCAACAAGTATATGAAAATTTACATTGATCTCAAAAATATCCACCATCTTCCCAAAGAGAAAATTACATGTCATTTTGAAGAAAAGTCTCTGGATTTGACAGTTTTTGAATTAGACAACAAAAATTATCGGTTTGGTGTGAAAAGATTGGCTGGAACCATTGTACCTTCTGAAAGCTTTTTCAAGATAAAAACGGATAGTCTTGTCCTGATGATGATGAAAGAGAATACCATGAACTGGGAACACGTCACAGGGACGGCTGCTGAGAAAACAAAAGAGAAAACAAAAAAGAAACCAAGTCTTGATGATGGCAAAGATCCCAGTGATGGAATTATGGACATTCTGAAAAACATCTATGAAGAAGGTGATGATGATATGAAGAGAACCATTAACCAGGCTTGGTTTGAGTCCCGTAACAAGTCTTCTTCATTTGATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04969	CS	CS domain	Domain	Interproscan
PF09032	Siah-Interact_N	Siah interacting protein, N terminal	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR007052	Domain	CS domain	Interproscan
IPR007699	Domain	SGS domain	Interproscan
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR015120	Domain	Siah interacting protein, N-terminal	Interproscan
IPR037201	Homologous_superfamily	Calcyclin-binding protein, N-terminal	Interproscan
IPR037893	Domain	Calcyclin-binding Protein, CS domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0015631	Molecular Function	tubulin binding	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0044548	Molecular Function	S100 protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-