Gene detail

Detailed information of pred2_31792.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_31792.1	ATP-DEPENDENT RNA HELICASE	Sc3x4tf_306	1082955	1172002	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_31792.1

ATGTCCATTAACACAAACGTTCTCACCCCTGAAATCACATTGGAACATTATAATGAATGGTTAAAGATTGACTCTCAGCCTCAGTTAAAAATGACTGCTGTGCCCAGAAGTAAATCTGGTGGGAAGGCGCTCGAAAAAAAGACTTCTGAAAAAATTGGTACCAGTGCAAGAAAAAAAGCCCCCGACGAATCACAAACCAAAAGGAATCCTGCTGAAAATCAGCGATATGCCAAGAAGTATCAGTCTGCCTACAAAAAAGAATTAATGAACCAGGTAAAGGATGCTGACACTGGTATAGATGAAGGAGTCCTGCATCAACTTGATGAAGACACAATTTATGCTGGATCTGTTGGCAATATGCAGGATTTAAAGCCCATGGATCCAGATGCTTACAAGGGTTTCACATTCACTAACACCCCCTGCATTTTGCCAGTGGAGGAACAGAAAGAGAAAATTCTTAACACAGTTGAAAGTAATCAAGTGACTGTAATCCAAGGTCCCACTGGATCGGGAAAGACCACTCATGTACCACAGATCATCCTGGATTATTATGCATCCCGGAACCAATATTGCAACATTGTGGTCACTCAACCTCGAAGGATTGCTGCCATCAGCATTGCCAAGAGGGTGTGCCAAGAACGACGCTGGCAGATGGGCACATTCTGTGGATATCAGGTTGGAATGGATCGGCAAGTGAATCCAAACACTTGTCTGACTTATGTCACGACTGGTGTTCTTTTACAGAAACTCATTAACACAAAAGATATGAACAACTACACTCATGTCATATTGGATGAGATTCATGAAAGAGATCAAGATGCGGATTTTTGCATTTTAGTTGTACGCAAATTGTTACGTAGTAATTCAAGAGGTGTGCGTGTGGTTCTCATGTCAGCCACCCTTGACTCCGATATGTTTGCCGATTATTTTGCTCGACCCCTTGGTGAAGTATTCGAGCCCGCACCTGTCATTTCTGTGGAAGGTAGCATATTCAGTGTCTCTGAATACTATGTTGAAGATCTTAGTCAGCTGGGACCGTTACCTTTCTTGGATCCTCAAAATCCTCATGTGACTGAAGAGGCCCAGCACTTGGCAATTAGCTTGATTCAACATTTTGATAAGTTGGAAGCTAAGGAGCAAGGAGATAAATATTTTAGCTCAGCTGTGCATGGGACCGTCTTAATCTTTCTGCCTGGTTTGGTGGATATTGATGGTTTATATGACAAGTTAAGAGAATTGTCTATCAGGCACAGGTTGGTGATTATACCATTACACTCTTCTGTTACCATTGAAGAACAGAACAAAGTGTTTATGCCGACACCTCAGGGTCACCGTAAGGTGATTCTATCAACAAACATTGCCGAGAGTTCAATTACTGTTTCTGACATCAAATACGTCATTGACTTTTGTCTTACCAAAAACTTGCTCTGTGATGCCCAGACAAATTTCACCAGCCTCCAAGTTGAATGGGCATCAAAAGCAAATTGTATTCAACGCAAAGGTCGTGCTGGGCGTGTGTGCAATGGTCGTGTGTACAGGCTTATCACTCGACAATTTTGGGATAATTATATTCGTGACTATAGCACACCTGAGATACAGAGATGTCCTCTGGACCTATTGGTTTTGCAGACAAAAATATTGGATTTGGGTGAACCAAAGGCCGTTCTGGCATTGGCGCTTTCACCACCGAATTTGGATGAAATTGAGCGAACAATTTTGAACCTGAAAGAAATTGGAGCCATTGGTATGCCTTTGGATGGAATTCACAAACGATATGATGGAGAACTGACCTATTTGGGGCGTGTGATTGCTTCTCTGCCTGTTGATGTTAAAGTTGGAAAACTGCTGGTCCTAGGGCACGTCTTTGGATTTCTCAAGGAATGCTTAATTCTGGGTGCTGCCTTATCTCTTAAAAGTATCATCTCTCGACCATACAAGAAATATTTGGAATCCTATCAACGCAAATTTGGTTGGGCTGATGGTTCATTCAGTGACTGTATTGCAATTGTGAATGTTTACAAGGCTTGGCAGAGCAACTGGTCCCGTGGGATTTTCAAACGCAGGGGTCAATCAGAAGCTGAGTGGGGAAGGAGCAACTTTATTCAAATCAAGAGAATTCGGGAGCTCACTCTTTGTGGTGCATTCTACCCAAATTACTTTGTGAAGGATTCTGTCGATGAAACTCAGGCTATGAAGTTGCTGTCTGGGAAAGATCCGTACAATACTGTGATGGTGAGTGGTATTCCTGCTAACCAAGGCTCACTCTACAAACCTCAGATTGAACGAATGTTCAGTGTCTGTGGTAACATCCTTGCCTTGCACATGGAAGAGTCCAAAATTTTTGTTGAATTTGCTCGGCAACACAACTTAAATCGAGATCACTACAGCCAACCGATTGGGATGGGTGAGACTGGGAAAGTGAACCCAGCTGTGTATCTGGCGCTAAAAATGCGACATGTAATTCGTGAACACCTGGTACTGCAGCAGTACACAAGGCAGGAGACAAACAGACTGATGAAAATGGTGCAGGAAGCACAGAGCAGTTCCACACACCAATTGCAAAAACTGCGCACAAACAGGTCAGTGGCTGACCTAGTTCGAGAATTGGAATGTCGTCTGGTAAAATTCAACATCCGCATACCAAAAGAAAGTCCGCCTTCCAAGAAGGAACTGAATCATCCGGAAGAAAAATTATTGTTTAAGATACTGAAAGATCCCTGCAAAGGCATGATATGTGCTGCTCCCTTCAAATGTGGTGAAGTTGCTTATTACAGAGCCATAATAGAAGAGATTGTGGACAAAGTGGTTTATGTGTTCTTTGTGGATTTTGGTAATGTGGATAAGGTGAACCTTCACAGTTTGAGACTATTACCCAGTTCTCTTAAAGCCATTCCTCACTTGGCATTTGAATGTTTCCTTAAAGGACTGAAGCCATCCCCTATAAAATGTTCAGATGGTTGTTGGTCATCAGAAGCTAATTCCTATTTCAAAAACATGGTATCAGATTACAAATTACATGCTGAGGTCTATTCTGTTGTGGGTAATGTTCTGCGTGTAGATTTGGTCAGACAGACAAAGATGGGTTCACAGATTAATTACAACCGAGAACTGTTGCACGACGGATTTGCTGATGTTGCTGAGGAAACTATCTTATCCAAAAAAAACCATGAAGAACGTGAAAGAGCCAAAACAGTGGCCCCTAGCTTCGGCCCAGAAGAACTGTCATCTTTGGACTGGAAAGAATTAGGTTTTGCGCAAGAACTAGAAAATGCTCGGAAATCTGGAACGAATAATGGTTGTGAATTCAACAACACTGAGATGCGTCAGTTGGACAAAACATTTAATATAAAACTAATGACCACAGTAGCTGAAAGTCCCTGGAGTAATGGCATTTGCAATCGACTAAATGCTGTAATTGGCGATATGATTAAACTTCATGGTCCCTCCAATCCTTTAGAGATGACTTTCTCTGGAATGACAAATACTGGCAGATTGAGGAGTGCTAAAATAGATCCTGAAAGTGTGAATTGTATCAGCATTGATGAAAACCCTCAGGATCCAAGTTCCAGAATGATGGTTGCAGGATTTGTAAACATGAGCTCAACTGGGCTCAACTTGTTGGCCAGGGACAGTACTCTCCTCCCTCATATACCTGGGCTTCCTGCACTCATTGCTCTGCTCTTTACCCCTTACTGTGAATTCAGAGTTGATCGCAACAAGACCCGCTACACTGGTGTGATCTGTGGATTGGGTCAGGATGAAGATACTGGTTGCCCCATCTATGCTGATCATGACATGGAGATTGAATTTGATGCAAACATTGGATATGAAGATATTATGAAGGTCAATGCTGTCCGCTTGGCTATAAATATTGTGATTGGCTCCCAGACATCAGCCAGTAGCTGGGGTCCTGATTCTATTGTTAGTCTCCAGAACACGGCACGTCTGAAACTATTAGATTTGATGCAGACACGGAGAGAAAAGGTAGATGTCTATCCTTCCTGGCAGCCATATGAATGGAATTTGCTGTCTCCATCAGATTACCTGAAACCTGACTATGTTGATAAGACCTGGGATTTGGTTCACAACCTTCACAAGTGTGTTGCCTTGGTGCCTGAAGGCAAAGAGGATGACAACAGCTCTGTTGCTTCAGCAAGTACCAGTCGCAATGAAAGTCTGATAAAGCATGCTGAAGAACTTCGCAGAATCTCCCTACTGTCCAGCTACGACAAAGTGATTCACTGCAAATTGTGTAATGAGACATTCCCCACGCCACAAATTCTCAACGTCCACGTCTTCACCAATCGACACATCAAAAATGAAGAGAAACTTATCAACAGACAT

Transcript

pred2_31792.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00567	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0010529	Biological Process	obsolete negative regulation of transposition	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-