Gene detail

Detailed information of pred2_31512.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_31512.1	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Sc3x4tf_287.1	708591	724767	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_31512.1

ATGTTTTACCACGTTTCTTTGGAACATGAAATTTTACTTCACCCTCGTTATTTCGGACCAAATTTATTGAATATTGTGAAAAAGAAGCTATTTACCGAAGTGGAAGGGACATGTTCTGGGAAATATGGCTTTGTCATCGCTGTGACTACAATAGACAATATTGGTGCCGGAATTATCCAACCCAGTCGGGGATTTGTGGTCTACCCAGTTAAATACAAAGCCATCGTTTTCCGACCGTTTAAAGGTGAAGTCCTGGATGCAATGGTCACCCAAGTCAATAAAGTGGGTTTGTTCACTGAAATTGGCCCACTCTCCTGTTTCATCTCTAGTCATTCAATTCCGGCAGACCTGGTGTTCGATACCAACTCAAGCGTTAACTGCTACAAGACAAAAGATGAGGACGTCGTCATTCAGCAAGAAGATGAAATTCGCATTAAAATTGTTGGTACGCGTGTTGATGCAAAGGACATTTTCGCTATCGGAACTTTGATGGACGATTACTTGGTTTCTAGAGCCACTAAACTCAGCCACCGCTCCAAACTTATCTCAGAATCACCGAGCATTTCAGCTAAGATAGCAGAGGCAGCCGCTGAGCTAGCTGCAAAGGAAGACGAAATCGCGATAGAAGCTGCGATTGACGCACAACTGAAGAGGCTGGAAAACCAAAGAGACCAAAGAAGCGAGAAATGCAGTTCCGCATACAGTGACGCAAAAAATCCCAGTCCGCCTGCTCCTTTTACAAGAGGTCGGGGAGGGCATGTTGCACCAAACGAAGCATCCCGACTGCAGACATTTCAGAAGTCAATAGCCCTCACCCAACTTCCAGCCCCAGAACCTACTGTGTTTTCTGGCGACCCTCTGAAGTTCACTGAGTGGAGCACAATCTTCAAGGCTCTTATAGAGATACGATGCTCGTATCCCGCAGATAGGCTCTTCTACCAGCAACGATACATTGATGGGGAGGCAAAATCCACCCTGAAAGGCAGTTTCCACCGAAAGGACGAAGAGGCCTACCAACAAGCATGGGAGAAGCTGAATGCCAGATATGGTCACCCCTTCATAGTACAGCGCGCCTTCAGAATAAAGCTTAACAGGTGGCCAAAGATTGGTGCAAAGGAGTACCTTACGCTAAGGGATTTCGGCGACTTCCTGCAAGCATGCAGCAACGCTATGCCTCATGTTAAGGGTCTGCAGGTACTGGACGACTGCGAGGAAAACCAGAAGATGCTGGTCCAGATGGGACCGTCACGGAACAGCTGGATCAAGCCAAAGATTATCCGAGATTCAGGGGACCTGCCCCCCGCCTACACAAGGGACTTCATTCCGCTTGAGCGTGCGCACATCCCCACCTGTCGAACAGCCAACAGGTGGAAACACTTTGCATCCATAGCGAAAGAAATGCCTCCACTAATGGAGTGTGGCGTGGGGCTCCGAATTGGTTACGACTGCTCCAGAGCACTGACACCACGAAGGGTCATCAATGGAGATGACTATGAGCCCGACGCCATTAAGACTGGCCTAGGTTGGTGCATCATAGGGAACGCGCCACAGTATGTAAACTCAAGCGACGTAACTGGTCTGTGTCATCGCATATCTACCAAGGAGCTTCCATTGTTGACACCAGCTGCTGGCATTCGTGCGCTCGATTCCAATCATGCAGACACCAGATCATCAGAAAAGTGTATACCTCAAGATATTCAGTTCTTGCCGACCTTAAGCGGAAGCACCCAGCGGAACGAGTTCCGATCGATACACGCTACATTCAAGGAAGGTGCTTACATGGATGGTGATGTGGAGAAGGCAGACAGGCAACCAGAGCTGGGAAAGGTATTGCATATTCCACATCGAAGGGTTTACCGCCATGGGGAGCCGGATGAAATCAGTGTAGTCCTTGATGCCGCTTCAAGGTATAAAGATACTGCCCTAAACGACAATCTGTTGATTGCGCCGAACATTACTAATGGGCTATCTGGAGCGCTCTGCCAACCCCAAAGTCATCTCATCGCAGTCATGTGCGATGAGGAAAAAATGTTCCACAGGTCCCACTTTACCTTCGGATCATTCGGTCATTTCAAAGCTTCGGCCGATGGTTTTGTTGACTTGAGCTGTGACCCTTCTTTAAGTGGAACCTATACAGATGTAGAACCCATGGGCTTATTTTGGAGCATGGTACAAAATCCTAACCAACAACAAGGTGCGAGGTTGATCAAATACGACTCAACCACTCCAGTTGTCTATGATCTGGCTGTTTTTTCTCAACACGTATCCGGTGAGTGTTTGTGGCGGTCCGGGTCCGACCTCAAAGCACTTGCCCATACCGAAATCCAACGATGGTACAAGAAGCCCAACATCAAAAAGATATCTGTGGACGAAGCAGGGATTTATGGATCTTTATTTATACCCGAAGAAAGGGAACCCGGTTTACACCTCCCGGCGGTTATTGATATGTGCGGTATTAATGGAGGATTGATAGAGTCTCGCGCGGCGCTTCTAGCTAACCGGGGATTTATAACATTCAGTCTNNNGTCGAAGCAATCTGATATAGAATTAGTTGTGTACCCAGGTACAGGTCATATTATTGAGCCTCCCGACACCCCATTATTTCACACATGCTATTCTTCTCTGTACAGGGGTACTGTACACTATGGGGGTATTTCAACACCCCACGCTCAGGGGCAAGAAAATGTGTGGTTCAAAATACAGGAATTCTTCAAAAAGAATTTA

Transcript

pred2_31512.1

ATGTTTTACCACGTTTCTTTGGAACATGAAATTTTACTTCACCCTCGTTATTTCGGACCAAATTTATTGAATATTGTGAAAAAGAAGCTATTTACCGAAGTGGAAGGGACATGTTCTGGGAAATATGGCTTTGTCATCGCTGTGACTACAATAGACAATATTGGTGCCGGAATTATCCAACCCAGTCGGGGATTTGTGGTCTACCCAGTTAAATACAAAGCCATCGTTTTCCGACCGTTTAAAGGTGAAGTCCTGGATGCAATGGTCACCCAAGTCAATAAAGTGGGTTTGTTCACTGAAATTGGCCCACTCTCCTGTTTCATCTCTAGTCATTCAATTCCGGCAGACCTGGTGTTCGATACCAACTCAAGCGTTAACTGCTACAAGACAAAAGATGAGGACGTCGTCATTCAGCAAGAAGATGAAATTCGCATTAAAATTGTTGGTACGCGTGTTGATGCAAAGGACATTTTCGCTATCGGAACTTTGATGGACGATTACTTGGTTTCTAGAGCCACTAAACTCAGCCACCGCTCCAAACTTATCTCAGAATCACCGAGCatttcagctaaGATAGCAGAGGCAGCCGCTGAGCTAGCTGCAAAGGAAGACGAAATCGCGATAGAAGCTGCGATTGACGCACAACTGAAGAGGCTGGAAAACCAAAGAGACCAAAgaagcgagaAATGCAGTTCCGCATACAGTGACGCAAAAAATCCCAGTCCGCCTGCTCCTTTTACAAGAGGTCGGGGAGGGCATGTTGCACCaaacgaagcatCCCGACTGCAGACATTTCAGAAGTCAATAGCCCTCACCCAACTTCCAGCCCCAGAACCTACTGTGTTttctggcgaccCTCTGAAGTTCACTGAGTGGAGCACAATCTTCAAGGCTCTTATAGAGATACGATGCTCGTATCCCGCAGATAGGCTCTTCTACCAGCAACGATACATTGATGGGGAGGCAAAATCCACCCTGAAAGGCAGTTTCCACCGAAAGGACGAAGAGGCCTACCAACAAGCATGGGAGAAGCtgaatgccagatatggtcaccccttcatagtacagcgcgccttcagaataaagcttaacaggtggccaaagattggtgcaaaggagtaccttacgctaagggatttcggcgacttcctgcaagcatgcagcaacgctatgcctcatgttaagggtctgcaggtactggacgACTGCGAGGAAAACCAGAAGATGCTGGTCCAGATGGGACCGTCACGGAACAGCTGGATCAAGCCAAAGATTATCCGAGATTCAGGGGacctgccccccgcctacacaagggacttcattccgcttgagcgtgcgcacatccccacctgtcgaacagccaacaggtggaaacactttgcatccatagcgaaagaaatgcctccactaatggagtgtggcgtggggctccgaattgGTTACGACTGCTCCAGAGCACTGACACCACGAAGGGTCATCAATGGAGATGACTATGAGCCCGACGCCATTAAGACTGGCCTAGGTTGGTGCATCATAGGGAACGCGCCACAgtatgtaaactcaagcgacgtaactggtctgtgtcatcgcatatctaccaaggagcttccattgttgacaccagctgctggcattcgtgcgctcgattccaatcatgcagacaccagatcatcagaaaagtgtaTACCTCAAGATATTCAGTTCTTGCCGACCTTAAGCGGAAGCACCCAGCGGAACGAGTTCCGATCgatacacgctacattcaaggaaggtgcttacatggatggtgATGTGGAGAAGGCAGACAGGCAACCAGAGCTGGGAAAGGTATTGCATATTCCACATCGAAGGGTTTACCGCCATGGGGAGCCGGATGAAATCAGTGTAGTCCTTGATGCCGCTTCAAggtataaagatACTGCCCTAAACGACAATCTGTTGATTGCGCCGAACATTACTAATGGGCTATCTGGAGCGCTCTGCCAACCCCAAAGTCATCTCATCGCAGTCatgtgcgatgaggaaaaaatgttccacaggtcccactttaccttcggatcattcggtcatttcaaagcttcggccgatggttttgttgacttgagctgtgacccttctttaagtggaacctatacagatgtagaacccatgggcttattttggagcatggtacaaaatcctaaccaacaacaaggtgcgaggttgatcaaatacgactcaacCACTCCAGTTGTCTATGATCTGGCTGTTTTTTCTCAACACGTATCCGGTGAGTGTTTGTGGCGGTCCGGGTCCGACCTCAAAGCACTTGCCCATACCGAAATCCAACGATGGTACAAGAAGCCCAACATCAAAAAGATATCTGTGGACGAAGCAGGGATTTATGGATCTTTATTTATACCCGAAGAAAGGGAACCCGGTTTACACCTCCCGGCGGTTATTGATATGTGCGGTATTAATGGAGGATTGATAGAGTCTCGCGCGGCGCTTCTAGCTAACCGGGGATTTATAACATTCAGTCTNNNGTCGAAGCAATCTGATATAGAATTAGTTGTGTACCCAGGTACAGGTCATATTATTGAGCCTCCCGACACCCCATTATTTCACACATGCTATTCTTCTCTGTACAGGGgtactgtacactatgggggtatttcaacaccccacgctcaggggCAAGAAAATGTGTGGTTCAAAATACAGGAATTCTTCAAAAAGAATTTATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575	S1	S1 RNA binding domain	Domain	Interproscan
PF03876	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF04775	Bile_Hydr_Trans	Acyl-CoA thioester hydrolase/BAAT N-terminal region	Family	Interproscan
PF08840	BAAT_C	BAAT / Acyl-CoA thioester hydrolase C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029	Domain	S1 domain	Interproscan
IPR005576	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR006862	Domain	Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014940	Domain	BAAT/Acyl-CoA thioester hydrolase C-terminal	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR036898	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR042490	Homologous_superfamily	Acyl-CoA thioester hydrolase/BAAT, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-