Detailed information of pred2_31331.1 in Architeuthis dux Gene info
Gene IDAnnotationScaffoldStartEndStrand
pred2_31331.1CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PSc3x4tf_3879656161013351+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyDUB|ULP|ULP

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02902Peptidase_C48Ulp1 protease family, C-terminal catalytic domainDomainInterproscan
PF16575CLP1_PmRNA cleavage and polyadenylation factor CLP1 P-loopDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003653DomainUlp1 protease family, C-terminal catalytic domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032319DomainPolyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR045116FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1/Grc3Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR12755CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000448Biological Processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008234Molecular Functioncysteine-type peptidase activityInterproscan
GO:0051731Molecular Functionpolynucleotide 5'-hydroxyl-kinase activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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