| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| pred2_29993.1 | DNA REPAIR PROTEIN XP-C / RAD4 | Sc3x4tf_796 | 2042915 | 2096731 | + |
| CDS | |||||
| pred2_29993.1 | |||||
| Transcript |
| pred2_29993.1 |
| Protein |
| pred2_29993.1 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | zf-C2H2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | Domain | Interproscan |
| PF03835 | Rad4 | Rad4 transglutaminase-like domain | Domain | Interproscan |
| PF10403 | BHD_1 | Rad4 beta-hairpin domain 1 | Domain | Interproscan |
| PF10405 | BHD_3 | Rad4 beta-hairpin domain 3 | Domain | Interproscan |
| PF13912 | zf-C2H2_6 | C2H2-type zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004583 | Family | DNA repair protein Rad4 | Interproscan |
| IPR013087 | Domain | Zinc finger C2H2-type | Interproscan |
| IPR018325 | Domain | Rad4/PNGase transglutaminase-like fold | Interproscan |
| IPR018326 | Domain | Rad4 beta-hairpin domain 1 | Interproscan |
| IPR018327 | Domain | Rad4 beta-hairpin domain 2 | Interproscan |
| IPR018328 | Domain | Rad4 beta-hairpin domain 3 | Interproscan |
| IPR036236 | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR036985 | Homologous_superfamily | Transglutaminase-like superfamily | Interproscan |
| IPR038765 | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR042488 | Homologous_superfamily | Rad4, beta-hairpin domain 3 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12135 | DNA REPAIR PROTEIN XP-C / RAD4 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000111 | Cellular Component | nucleotide-excision repair factor 2 complex | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003684 | Molecular Function | damaged DNA binding | Interproscan |
| GO:0003697 | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006289 | Biological Process | nucleotide-excision repair | Interproscan |
| GO:0006298 | Biological Process | mismatch repair | Interproscan |
| GO:0071942 | Cellular Component | XPC complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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