Gene detail

Detailed information of pred2_28547.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_28547.1	GMP SYNTHASE-RELATED	Sc3x4tf_578	621774	639617	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_28547.1

ATGCTCGTCTACTGGACTAGGATTCGTCTGGCTGGGATCTTTTACAATCGGTCGTCGTTTATAAAAAAGCTTCAGATCGGTCACCTTAGCCATTTTGATGGTAGCGGGTGTGAGGTCTTCATAAAAATCAATTCGAAGGAGGAACGGTTCCATCACTTGTCTTCTAGCAGGAGCTTCGCCACTTGTGCGGTTTACGGGTTCAAGACCTCTTCACATCTCGGAACTGGAGTTGAAGCCCCACCAAGGCGAAAAAGCATGACGGATGAACACCATGGGGGAAGTGGCGAATCCACGTGTAGTACAACAAGCCGTGAAGAGCACGAAGAAGAAGAAAAGGTGTGTATATTGGATGCTGGGGCTCAGTACTGTAAAGTGATCGACCGAAAGGTAAGAGAATTGATGGTCAAGGCCGATATTCTACCCCTGGATACCCCGGCCACCCGTTTAAAAGAACTAAACTACAAAGCAGTTATTATATCTGGGGGACCGAACTCGGTCTACGCCGAAAGTGCACTCCCTTACGACCCGAATCTATTTCGATGCGGTCTACCTATTCTGGGCATCTGTTATGGGATGCAAATGATGAATAAAGAGTTTAATGGGACGGTCGAGAGTAAACATGTTCGGGAGGATGGACAGTTCACCATTACAGTCGACCAGACGTGTCCGATTTTCAAAGATCTCAACCCTAAACAGCAAGTACTGCTCACCCACGGAGACAGCCTGGCCACGGTGGCTGAAGGGTTTAAATCTGTAGCCACGTCAGGAGACATAATTGCTGCTATTGGTAATGACCAGCTTCGGATGTACGGGGTCCAGTTTCACCCCGAAGTCGACCTTACGGAACATGGGATCGATATGTTTAAAAATTTCTTGTACCACGTGTGTGGCTGCCATGCTACTTTCACTATTGAATCACGGGAGTCGATATGTATCGAACATATTCGGCATGTCGTTGGAAATAAAAAGGTCCTGATGCTGCTAAGTGGGGGCGTTGATTCTACAGTATGTGCTGCCTTACTGAGAAAAGCCCTCCACGGAGATCGGATTGTAGCCATTCACATCGATAATGGGTTCATGAGAAAATTAGAAAGTACCCAGGTAGAAGAATCTCTATCGAAAATCGGAGTAAAAGTTAAAGTAATTCGGGCGGCCCAGACGTTCTATCATGCCACCACGACTCTCCCCATCAATAAAAACGACCCTGATTCGGCCAGACGACAAACTAATGTTTTGAATAACACTTGTAACCCCGAAGAAAAACGTAAAATTATTGGGGACACGTTCATGAAAATAGCTGACGATGTCCTTAAAGAAATGAACTTAAACCCTGAGGATGTTATCCTTGGTCAGGGCACATTAAGACCCGATCTGATCGAAAGTGCCTCGTCTTTGGCTAGTACGAAAGCATCGGCTATTAAAACCCATCATAACGATACTGAATTGGTCCGAAAACTTCGGAGCGAGGGTCGCGTAATTGAGCCCTTAAAAGATTTCCATAAGGACGAGGTTCGAGCTCTGGGTAAAGATCTAGGCCTTCCACCTGAATTAGTACAAAGACACCCTTTCCCAGGACCAGGACTCGCCATTCGAGTGATATGCGCCGAAGATCGCTACATGGAAAGAGATTTTGACGAAACCAATCAACTCCTGAAAATTATTATTAACTTTAACAACTCCCTGAAAACCTCCCCACATTATTTGGACGTGGTCAAGGAGAAATTACCCCCCAGTGAACAAAGCCAGCTGTCCGCACTGACCGCTGGTGTGGAGGGCATGGGTGCTCATTTGTTACCCATAAAAAGCGTGGGAGTCCAAGGTGATCATAGAACCTACAGTTATGTGGCCGCTTTGTCTGGGGATGGCAAGCCGAAATGGGAGACCCTCATGAAGTTGGCCCTGTTTATACCCAAAATCTGTCACAATATCAATCGAGTGGTTTACGTGTTCGGGGAAAGGGTTCGATACCCGATCAAAGATATCACCCCGACTTACCTGACTGAAGATGTCCTTGCCACCCTACAACAAGCTGATTACGTGGCCAGCAAAACTCTTCAAGATTCTGGTTACATCTCGAAACTCAGCCAGATGCCCATCATCAGCTGCCCTGTCCATTTTGATCGGGACCCGGTCAACTTTCAACCTTCTACGAAAAGATCAATAGTCATTCGGACTTTTATCACAAATGATTTTATGACTGGGATCCCTGCAACTCCTGGCTCTGCCCGTCTCCCCGAGGAAGTTCTTAGTTCCATGGTTGATGGTATTTTGAGTACGGTACCCAGTATTTCTAGGGTGATGTTTGACCTGACTGCTAAACCCCCGGCCAATCAAGATCGTTCCCTGCATCACGTACGCCCTGCAAGTTCTCTCCCTTGTCACGTCACTCTCTTCAAACGAGGCGAAATCCTCGTTGTTAATGGTGGCTTCTTTCTTCCTACTAAACCTAACAAGATGAGTACCTATAAGAAAACGGTCATAAAGACAATCCCACGGTCCCGAGAGGATGCGACCGTAGACAGCCTTTATTGGAAACTAGAGCCACCAGTTATTAAGCGAGAATACGGTGCAATCAGCTATGTGCATTTTTCTCAATGCGAACCTTTCAACTTCGCAGTGACCAATTCCACGCGTGTCCATATCTACAGCGCACAAACCAACCAGATCGAAAAGACCATTACAAGATTCAAACAAACCGCTCACAGTGGTTCATTCAGATCAGATGGCTCCCTTCTTGTTGCGGGGGGCGAAGAGGGGATCGTCCGTTTGTTTGGGATCGAGAAAAACGCCATGTTAAGGGTCTTTAAGGGCCACACAGCACCCGTTCATGTGAGCCACTTTACATGCGATAACCGAATCTTCTCGGCTTCCGATGATCTTTCACTTAAAGTCTGGGATGTTGCAACTGAAAATAACCTGGTTACTTACAAGGAACATAAAGATTTCATCCGGTGTGGTACATCTCCAGCCTCTAACCCAGACCTCATTTTAACCGGTGGTTACGACCACGTGGTAAAAATGTACGACACCCGTCTCAAAGAAAGTGTTATGTCCGTCGACCACGGTTGCCCCGTAGAAAGTGTTATTATTTTCCCTTCTGGGGGTCTCTTCTTCTCGGCTGGTGGAAATTATATCAAAGTCTGGGATGCTCTAGCAGGAGGCAAGCTTCTAAAACAAATATGCAATCATCACAAATCCATCACTTCCCTTGGATTTTGCAGCAACTACCAACGATTGTTGTCCGGATCTCTGGACAGACATATCAAAATGTACGACATTTCGACATACCAAGTTGTCCACACCCTTGATTATGCCGGGGCTGTACTCAGTGCAGCCGTGTCCCCTAATGATAGCTGCCTTGTTATGGGAACCACGGACGGTCTTCTTTCTATACAACATCGAAAGAAAGAATTAGAGACGAAAGAGGTTATAACAAACCAACCCCAGAAATCTTCCTTTCATTACAGTGTGAGGGCCCGACGTTTCTATAGCCGGGAAAAGGATGATCTGGTTGTAAAGAGCAGTAGAAAAGAGGTCCTTACCCCCTGGGATAAACAACTGAAGCACTTTAACCACAGTCGAGCCCTTGATTGTGTTTTGGAATTGAGAGTAAGATCTAAAAGTCCGGAGATTGTGATCAGTGTGATGCAAGAACTGATTCGTCGTGATGTGATCAAATCCGCTCTGGCCGGTCGCGATGAAAGACAATTACAAATCCTCTTGAAATTCATCATCGTCAATATTTCAAATATAAATTTCATGCCTACTTTGACCGATGTGTCTAATATTTTACTTACTCTTTACTCTTCGATGATGGGACAGTCCGGTCCTTGTTCAGAGGCCCTGCTTAAATTACAGACTATTTTGAATGAAGAACTGAAATACTTGAAGGTTTGTTCACAAACCCTCGGGTCAATGGACATGGTTTTTGCTGCAGCAGAAGTAAACAGTCAAAAACCACAAAGTAAGATTAACTCTGAC

Transcript

pred2_28547.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00117	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00958	GMP_synt_C	GMP synthase C terminal domain	Domain	Interproscan
PF06508	QueC	Queuosine biosynthesis protein QueC	Domain	Interproscan
PF09384	UTP15_C	UTP15 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001674	Domain	GMP synthase, C-terminal	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR004739	Domain	GMP synthase, glutamine amidotransferase	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR017926	Domain	Glutamine amidotransferase	Interproscan
IPR018317	Family	Queuosine biosynthesis protein QueC	Interproscan
IPR018983	Domain	U3 small nucleolar RNA-associated protein 15, C-terminal	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR025777	Domain	GMP synthetase ATP pyrophosphatase domain	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11922	GMP SYNTHASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003921	Molecular Function	GMP synthase activity	Interproscan
GO:0003922	Molecular Function	GMP synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006164	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006177	Biological Process	GMP biosynthetic process	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-