Gene detail

Detailed information of pred2_26203.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_26203.1	HMG BOX-CONTAINING PROTEIN 1	Sc3x4tf_402.1	905276	840462	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_26203.1

ATGGCGTCGGTTGGGGACGCCACCTCAAGTAAGAGGTCTCGTGTGAAAACTGAACGAATGCAGGAATTTGAAAAATCCCAGGAAGACAATGTCACCCAGAAGTTGTTGAAGTGTCCCAAAGATGGTTGTGATAAAGTTTTTACAAGTGTTCCTGGATTACGCTATCACACTAAGACACATGTAGAGCCGGACAGAAGATTCATTTGTGCAAAATGTGACAAAAGCTTCAAGAGTGCCAATGGTCTTAAGTATCATCGAGGCAAGACCAAAGGCTGCGACCTGTCAACCAGTGGCTACCAACTGGAGAAGATTGATAAGTCAAGTAACAGTGAAGGAGACACTGAGGATTCAGCCACAGAAGAATCACAGGAGATGTCAGCTGATGAGTTACACAACTACCACCATCACTTGCACGTGAATGACAAAGCCAGAGAAAACTGTGATTCTGTGTGCCTCACTGAAACAAGAGATGATCTGTGTGCTAGTAAGAGCAAACCAGTCCCCTTGTTGTTACCAACAGCCAGTGAAACTACACTTGTAGGTACTCCTAGTACCACATCTTGGTCCTTGATGGATGAGAATTGCACCAGTGATGTCAATAAACTGCAGCAATTGGCAATTATTGCAACCGGACCAGAAAGTCCACTTCTCAAGCCTGAAATGCGAGTTTGCTCTGATGGAAGTGACCCTCAAGTGACTTCTTCATCTCCTTGCCCAACATCCACGAAAGAACCATGTAAAGAAAGTGGTACATGGTCACATACTTGGCCGACAACTGTCTGGCAGTGTTTCATGAAAGGAGTGCAAATTCAGTTTCCTGAAAATACCTGGCAAAATGCAGAAGAACTTGCTTGCATTGAACAGCTCAGAAAATCGTCAAGTGGCAAGGAGAACAGCCAAGATGGTTATGCTGCCAAGGGTTTACGTTTGGTGCGAATGACTAAGATATTAGAAGAGGACAAAGACAGTTCAGGAAAATCATGGCATCTTCATCTTAATATGTCACCTGACCTGGACAACCAGTCTTCACTGCTTGCAAAGTGTGCACCGGACCATCCTTTCTTCGTTATGGAGAAAGGTTGGTCTTCATACTCACCAGCAGTCACAGTGGAGCACTATGGCATTCCATGTCGTAAACTGGAGGAAGATGACATTTGTCTACCTCCAACACACCATGATGCCACATTTACTCATGATGTTTTTGAAACTTTGCAACAGAGTTTGGATTTCACCCCTTCAGATTCATCTGCAGTGCTAGCCTTGAGCAACATGGCTAAGCAACGGCGTGACCTTGAGCAAGAGAACCTGGAAAGACGTAACCAAGAGAACCAAGCTAAGAAACAGAATGCGATAAAGCCTGATTCTCTAAAAGCCAAGCGTCCCATGAATGGATTCATGCTGTTTGCAAAAAAAAATAGACTGGAATACACTCAGATGTACCCTGGCAAAGACAATAGAGCAATTAGCGTGATGCTTGGAGACAGATGGAAGAAGATGAAGACGGAAGAACGTGGTGTATTTGCTGAGGAAGCCAAGTATTTAGCTGAACAACAAAAGCGAATTCATCCAGATTGCTGGAAGAGGAAATCTGTGAAAAGCTGAGTCTACGAAGGTAAAGATGATATGTCAAATGAAAAGATTCTCACCCCTGTGAAAGAAATCACTCAAAAGGAATTCAGTGAGATTTTTCGAACAGTCCAAACTTTGAAACAGCAATGTGTTGAAGCCAACCCAGACATGGAACATAACAGCCACATTTGCTGCAATGTGGAAGGGCTGTGTGCCCATATTTCGAGATGTACGAAAAAAGAAGGAAGGAAAAAACTTACCAAGCTACATTTATTTATTTCTGGGCTAAAGATGGCCAGGCGGCAGAAGAACGAGAGAAAGAAGTCGTCGATGAATGAGGTTATTACCAAGGAATGTACCATTCATCTGCACAAGAAAGTCTATGGAGTGAAATTAAAGAAAAAGGCCCCGAAAGCCATTAAGAAAATCAAGATGTTCGCCGAAAGAATGATGCGCACCCAAGATGTTCGTATTGATACAAAATTGAACAAACATATTTGGTCAAATGGCATCCGCCATGTGCCGTTCCGCGTGAGGGTAAGGCTGTCCCGTCGCCGTAACGAAGATGAAGATTCGCCCAACAAACTCTACACTCTTGTTACCCATGTCCCTTTGGTTAATTTTAAGGGAACACAAACAATGAATGTGGAAAACGAG

Transcript

pred2_26203.1

ATGGCGTCGGTTGGGGACGCCACCTCAAGTAAGAGGTCTCGTGTGAAAACTGAACGAATGCAGGAATTTGAAAAATCCCAGGAAGACAATGTCACCCAGAAGTTGTTGAAGTGTCCCAAAGATGGTTGTGATAAAGTTTTTACAAGTGTTCCTGGATTACGCTATCACACTAAGACACATGTAGAGCCGGACAGAAGATTCATTTGTGCAAAATGTGACAAAAGCTTCAAGAGTGCCAATGGTCTTAAGTATCATCGAGGCAAGACCAAAGGCTGCGACCTGTCAACCAGTGGCTACCAACTGGAGAAGATTGATAAGTCAAGTAACAGTGAAGGAGACACTGAGGATTCAGCCACAGAAGAATCACAGGAGATGTCAGCTGATGAGTTACACAACTACCACCATCACTTGCACGTGAATGACAAAGCCAGAGAAAACTGTGATTCTGTGTGCCTCACTGAAACAAGAGATGATCTGTGTGCTAGTAAGAGCAAACCAGTCCCCTTGTTGTTACCAACAGCCAGTGAAACTACACTTGTAGGTACTCCTAGTACCACATCTTGGTCCTTGATGGATGAGAATTGCACCAGTGATGTCAATAAACTGCAGCAATTGGCAATTATTGCAACCGGACCAGAAAGTCCACTTCTCAAGCCTGAAATGCGAGTTTGCTCTGATGGAAGTGACCCTCAAGTGACTTCTTCATCTCCTTGCCCAACATCCACGAAAGAACCATGTAAAGAAAGTGGTACATGGTCACATACTTGGCCGACAACTGTCTGGCAGTGTTTCATGAAAGGAGTGCAAATTCAGTTTCCTGAAAATACCTGGCAAAATGCAGAAGAACTTGCTTGCATTGAACAGCTCAGAAAATCGTCAAGTGGCAAGGAGAACAGCCAAGATGGTTATGCTGCCAAGGGTTTACGTTTGGTGCGAATGACTAAGATATTAGAAGAGGACAAAGACAGTTCAGGAAAATCATGGCATCTTCATCTTAATATGTCACCTGACCTGGACAACCAGTCTTCACTGCTTGCAAAGTGTGCACCGGACCATCCTTTCTTCGTTATGGAGAAAGGTTGGTCTTCATACTCACCAGCAGTCACAGTGGAGCACTATGGCATTCCATGTCGTAAACTGGAGGAAGATGACATTTGTCTACCTCCAACACACCATGATGCCACATTTACTCATGATGTTTTTGAAACTTTGCAACAGAGTTTGGATTTCACCCCTTCAGATTCATCTGCAGTGCTAGCCTTGAGCAACATGGCTAAGCAACGGCGTGACCTTGAGCAAGAGAACCTGGAAAGACGTAACCAAGAGAACCAAGCTAAGAAACAGAATGCGATAAAGCCTGATTCTCTAAAAGCCAAGCGTCCCATGAATGGATTCATGCTGTTTGCAAAAAAAAATAGACTGGAATACACTCAGATGTACCCTGGCAAAGACAATAGAGCAATTAGCGTGATGCTTGGAGACAGATGGAAGAAGATGAAGACGGAAGAACGTGGTGTATTTGCTGAGGAAGCCAAGTATTTAGCTGAACAACAAAAGCGAATTCATCCAGATTGCTGGAAGAGGAAATCTGTGAAAAGCTGAGTCTACGAAGGTAAAGATGATATGTCAAATGAAAAGATTCTCACCCCTGTGAAAGAAATCACTCAAAAGGAATTCAGTGAGATTTTTCGAACAGTCCAAACTTTGAAACAGCAATGTGTTGAAGCCAACCCAGACATGGAACATAACAGCCACATTTGCTGCaatgtggaaggGCTGTGTGCCCATATTTCGAGATGTACGAAAAAAGAAGGAAGGAAAAAACTTACCAAGCTACATTTATTTATTTCTGGGCTAAAGATGGCCAGGCGGCAGAAGAACGAGAGAAAGAAGTCGTCGATGAATGAGGTTATTACCAAGGAATGTACCATTCATCTGCACAAGAAAGTCTATGGAGTGAAATTAAAGAAAAAGGCCCCGAAAGCCATTAAGAAAATCAAGATGTTCGCCGAAAGAATGATGCGCACCCAAGATGTTCGTATTGATACAAAATTGAACAAACATATTTGGTCAAATGGCATCCGCCATGTGCCGTTCCGCGTGAGGGTAAGGCTGTCCCGTCGCCGTAACGAAGATGAAGATTCGCCCAACAAACTCTACACTCTTGTTACCCATGTCCCTTTGGTTAATTTTAAGGGAACACAAACAATGAATGTGGAAAACGAGTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF01198	Ribosomal_L31e	Ribosomal protein L31e	Family	Interproscan
PF08517	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000054	Family	Large ribosomal subunit protein eL31	Interproscan
IPR003652	Domain	Ataxin, AXH domain	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR023621	Homologous_superfamily	Large ribosomal subunit protein eL31 domain superfamily	Interproscan
IPR036096	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR039655	Family	HMG box-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-