Gene detail

Detailed information of pred2_24279.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_24279.1	DEUBIQUITINATING PROTEIN VCIP135	Sc3x4tf_639	3542977	3498342	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_24279.1

ATGAAAACAATGACACGGAAATTGCTATCTGCCTCTTGCCCAAATGACCATTGCAAGGCCAATTTGGTGTTTGCTTCTGATGCCCCCTATGTTGAGTGCCTGTTGTGTGGTTTGCAGCACAAGAAGGAGACCATTAGGGATGTGATTTCATTCCATGACTCTACGACAACTGGAGACATCAAAGTCAATGGTATTTCCAGCTACGTTTGCAAATTGTTATCTCCTCTGCTGACCCGTTACGGAATGACCAAGGACACGGGCGAGGCAAAACTGTTGTCCAAAATGGGCAAGGGTGAGATTTTCGATTGCAGCCGTCTCAGTAGCCGAGCATTTCTCATAGAACCTTGCAATCTCAACGTCCCCGGGTATGGCTGCGACTCTACGGGTAGCCTCGACTATTTAGCTGAGACCCTGTTTGAAATCAAAATGGCTAATGCGAATGGTCAACGACTTGTGCCAATCCATGCCGACGGTGATGGACACTGTCTAGTCCATGCCATTTCTCGAGCGCTCGTCGGGCGTGAACTCTTCTGGCATGCTCTCAGGGAGAACTTACAATGCCATTTCCAAGAGAAGCTGGACTTGTACAAAATACATTTCCAAGATTTCATTTATGTTTCCGAATGGCAAGAGATAATAGACGAGTGTAAACCAGACTTTGTTCCTCGTGAAGGTGAACTGCTTGGACTCCGGAATATCCACATATTTGGTTTGGCCAATGTCCTTAAGCGTCCAATTGTCTTATTGGATTCTATTGTTGGAATGAACAGTTCAGGTGATTATTCAGGTGTGTTCCTGCCAACCCTTTGCGGCAAAGACGAATGTTTGGACAAAGATGGTCAACTAAATAAACCTCTGTGCATTGCTTGGAGCAGTTCTGGTAGGAACCATTACATTCCACTGGTTGGAATTGAAGGCAAGCCAGCACCTCGTCTACCGCGGAGCATGTTACAGAAAGCTTGGGGAATGCCTGTTGATTTAATTAATGAATATATTGACTTTGATGAGAATGACTGCTGTACAATTGGAGGAAATAAACTGGGTGACAGATACATCCGGAAACTAATTGAAGCAATGGAGAAAGTCTACTATGAGGACAATGTTGTACAGCCGAACTTGGTTGCTGACACCTATCAACTTTTACGCAAACAGTCAGTCATTGATAGTATGAAGCCAGACACAGTGATGCACGTTTGTAAACAATTAATTCAGCAAGGCCAACTTTATCGCTGCCTTAACTGTGATTGTCTAAACAATGTGAACAGGCCACAAGATTGGGTCATCAACCAGACTGGGCACTTGAAAACCCAGAGTGACCCTTATGGACAACTTGAAGACGTTCTGCTTTATCCGTATGGGAGAAAAGACTTTCTGCAGCCTGATGTAGACAAAAGCAATTTAGTCCGATGTGAATATTGTAACGTAAATCGATTGCGTTTGGTGAATGTTGATGGTAAACTATGTTACCGAAATGGGGATCTGCTTACCAGTTCCCATGGAAACAAATATTATTGGAATGGAATCTTTTATAAGAACCTTCCACAAGTTTTGCCTCTGAAATTGGATTGGAAAAATAAAAACCTTGAAGTGAAAGTTTTCTGGTTTGAGAATGAAATTGATCCTTCACTGAACAGCAATGCTTTTGAAATTGGAAGACAGTTGGTACTGGAGCATTTCCCAGGAGAATTTAACACTGAACCCCTTGTGAATTCTCTTGTCAACCAGATTCTTGAGTTGACAAAAATTAATGATGCTGCTCGTTTATCTGCTGCTGCTGATGATGATGACACTCAGGCTGATTCAAGTCATCTGCTGACTGAATTCGAACGGGGTGTGCTTTCTGAAAAGACGAGAATCTTGATGCAAGCATTTGATTCGGCCATTGCGTCTGATGCTGCCCAAGAGGAGAATTCAATGTCAGGGCTCAGTGACCCCCAGCATGCTGGACAGATTCAACCAGCCACAGAAATGGTTGAAAATCTGATTGGTGCTGTGGGTAAGCCTGTACATTGCCAATTGCAACCCCAAGGAGAACCAATGAAGCCTGGCCCTACACAGAGATCACCCCAAACAAAATCTGCAACCGCTAAACCATCCCCATCTAAAACACAAACGCCAGCAGCTACCAAGGTGAAATGTCCTCCCACTAAAAGCATCCGTCTTTCTACATCCACTGGACAAAAGGTGTTGCTCAGTCTTCAGAATGATATTACCTTTGAAGAGTTGCAGGCTTTGATTACCAAAGAACTTGGCATTCCTGCCACTCTACAGAAAATCCGGATGGGTTTTCCCCCTCGTCAGTTGTGCCCAACCAGCCACACCGATCTGGTGCCACTGAATCATGGAGACAGACTTGAAGTTGAGATTTTACCAGAAGAAGACTTTTTTGGTGCTGAACTTCTGAAAGCTTTATTGCTTGCTGCTCATCTTCAAGGCAAAGACATTTGGTCTTACATCCAAGAATGTCCAGATTTCTTTCACAAAGAAGGAATTATCTATTGTCAAATGCAACAAGCCAGAAAACAAGTGAACGAATTACATTTCACCATTCCATTTCTACCTGGGAAGACCTTCTATTACAGTTCTTCCAATGATGTTGTGCAGATTTGCTTGAAAGCTTACGGACATTTTGATGTAGAGCCTGGCATCGAATGGAAAGTCCAACAAATTCCTCTGAATTTAATTCGGCCGTGCCATTACCATATGACCCATTCCAACAACCAGGTGCATTCCCGGCACCCAAAAGCTCAGCCCCCTTTCTCTGGACAGGGACGCTCGTTAATGTTACGGCGCCGAGAGGCCAAGATGACTATGAGCCCCGGAAAGACAGACTTACCTTCAATGGACTCTGATGCTGAACATACAAACATTTCTTCCTACCAGAGGTTGGGGCCAGGCTTCAGTATTCTTGGCGGCGAGATGTCAAATGTCACAAACACCAGTTTAGAAAAGATTCGAGCCCTGGCTGCAAATATTGACCCTCATTTGGATTTTACCAGGGATCAGGTAAGAACCGGATTTTATTTGACTTTTCTCTTTGCAGAAACGTTTGTCTATAGGAAATTGTTTATAAACTTTGACCTGGAGAATTTTGTCCAAGGCGGTCATCCTTCGACAGCAGAGTGGTCAAAGATACGCGAAAAATGTATCCAAATCTACAGAAAGCATATGGCCTATACTTCAGCGAATAAATCGTGTGAACAACAGAACACGTCTTTAATTTCCATTAAATACGAGGATGAATTGAAATTTATCTCCAAACTCATAACAAAAGCCAATTTGTGGATCGGCCTTACTCGGGACTCACCAACCGGTAAATGGCATTGGGGTGATGGACGTGAATTTGTGAACCGTTACTGGTGGAATCGTGGTCAGCCTGGGAATAATATGTTTGCCTATTTCAGGGAAGGATCTTTGCGTGGGAGTTTGGGGTCAAACACGAGATTTTATATTTGTGAAAAGAAAACCACCAAGGTCTGGACATTGGTCAACAGCGACGATTATCATTTTGACGATTTGTGTGGAGTAGAAATAATGCCCAACTGCGAAGATCTGCCGTGCGAAGATGTGTGTCAATCCCACCAGGATTGCGACCAATTCGCAACAATGCTCAACGTGTGTGTCAATATAAAGAATGTCTCACAGACAGAAAATTGTGTTTTAAAGTTGAGACGAAACATGAAACTCTACAATTTGAAAAGCAAATGC

Transcript

pred2_24279.1

ATGAAAACAATGACACGGAAATTGCTATCTGCCTCTTGCCCAAATGACCATTGCAAGGCCAATTTGGTGTTTGCTTCTGATGCCCCCTATGTTGAGTGCCTGTTGTGTGGTTTGCAGCACAAGAAGGAGACCATTAGGGATGTGATTTCATTCCATGACTCTACGACAACTGGAGACATCAAAGTCAATGGTATTTCCAGCTACGTTTGCAAATTGTTATCTCCTCTGCTGACCCGTTACGGAATGACCAAGGACACGGGCGAGGCAAAACTGTTGTCCAAAATGGGCAAGGGTGAGATTTTCGATTGCAGCCGTCTCAGTAGCCGAGCATTTCTCATAGAACCTTGCAATCTCAACGTCCCCGGGTATGGCTGCGACTCTACGGGTAGCCTCGACTATTTAGCTGAGACCCTGTTTGAAATCAAAATGGCTAATGCGAATGGTCAACGACTTGTGCCAATCCATGCCGACGGTGATGGACACTGTCTAGTCCATGCCATTTCTCGAGCGCTCGTCGGGCGTGAACTCTTCTGGCATGCTCTCAGGGAGAACTTACAATGCCATTTCCAAGAGAAGCTGGACTTGTACAAAATACATTTCCAAGATTTCATTTATGTTTCCGAATGGCAAGAGATAATAGACGAGTGTAAACCAGACTTTGTTCCTCGTGAAGGTGAACTGCTTGGACTCCGGAATATCCACATATTTGGTTTGGCCAATGTCCTTAAGCGTCCAATTGTCTTATTGGATTCTATTGTTGGAATGAACAGTTCAGGTGATTATTCAGGTGTGTTCCTGCCAACCCTTTGCGGCAAAGACGAATGTTTGGACAAAGATGGTCAACTAAATAAACCTCTGTGCATTGCTTGGAGCAGTTCTGGTAGGAACCATTACATTCCACTGGTTGGAATTGAAGGCAAGCCAGCACCTCGTCTACCGCGGAGCATGTTACAGAAAGCTTGGGGAATGCCTGTTGATTTAATTAATGAATATATTGACTTTGATGAGAATGACTGCTGTACAATTGGAGGAAATAAACTGGGTGACAGATACATCCGGAAACTAATTGAAGCAATGGAGAAAGTCTACTATGAGGACAATGTTGTACAGCCGAACTTGGTTGCTGACACCTATCAACTTTTACGCAAACAGTCAGTCATTGATAGTATGAAGCCAGACACAGTGATGCACGTTTGTAAACAATTAATTCAGCAAGGCCAACTTTATCGCTGCCTTAACTGTGATTGTCTAAACAATGTGAACAGGCCACAAGATTGGGTCATCAACCAGACTGGGCACTTGAAAACCCAGAGTGACCCTTATGGACAACTTGAAGACGTTCTGCTTTATCCGTATGGGAGAAAAGACTTTCTGCAGCCTGATGTAGACAAAAGCAATTTAGTCCGATGTGAATATTGTAACGTAAATCGATTGCGTTTGGTGAATGTTGATGGTAAACTATGTTACCGAAATGGGGATCTGCTTACCAGTTCCCATGGAAACAAATATTATTGGAATGGAATCTTTTATAAGAACCTTCCACAAGTTTTGCCTCTGAAATTGGATTGGAAAAATAAAAACCTTGAAGTGAAAGTTTTCTGGTTTGAGAATGAAATTGATCCTTCACTGAACAGCAATGCTTTTGAAATTGGAAGACAGTTGGTACTGGAGCATTTCCCAGGAGAATTTAACACTGAACCCCTTGTGAATTCTCTTGTCAACCAGATTCTTGAGTTGACAAAAATTAATGATGCTGCTCGTTTATCTGCTGCTGCTGATGATGATGACACTCAGGCTGATTCAAGTCATCTGCTGACTGAATTCGAACGGGGTGTGCTTTCTGAAAAGACGAGAATCTTGATGCAAGCATTTGATTCGGCCATTGCGTCTGATGCTGCCCAAGAGGAGAATTCAATGTCAGGGCTCAGTGACCCCCAGCATGCTGGACAGATTCAACCAGCCACAGAAATGGTTGAAAATCTGATTGGTGCTGTGGGTAAGCCTGTACATTGCCAATTGCAACCCCAAGGAGAACCAATGAAGCCTGGCCCTACACAGAGATCACCCCAAACAAAATCTGCAACCGCTAAACCATCCCCATCTAAAACACAAACGCCAGCAGCTACCAAGGTGAAATGTCCTCCCACTAAAAGCATCCGTCTTTCTACATCCACTGGACAAAAGGTGTTGCTCAGTCTTCAGAATGATATTACCTTTGAAGAGTTGCAGGCTTTGATTACCAAAGAACTTGGCATTCCTGCCACTCTACAGAAAATCCGGATGGGTTTTCCCCCTCGTCAGTTGTGCCCAACCAGCCACACCGATCTGGTGCCACTGAATCATGGAGACAGACTTGAAGTTGAGATTTTACCAGAAGAAGACTTTTTTGGTGCTGAACTTCTGAAAGCTTTATTGCTTGCTGCTCATCTTCAAGGCAAAGACATTTGGTCTTACATCCAAGAATGTCCAGATTTCTTTCACAAAGAAGGAATTATCTATTGTCAAATGCAACAAGCCAGAAAACAAGTGAACGAATTACATTTCACCATTCCATTTCTACCTGGGAAGACCTTCTATTACAGTTCTTCCAATGATGTTGTGCAGATTTGCTTGAAAGCTTACGGACATTTTGATGTAGAGCCTGGCATCGAATGGAAAGTCCAACAAATTCCTCTGAATTTAATTCGGCCGTGCCATTACCATATGACCCATTCCAACAACCAGGTGCATTCCCGGCACCCAAAAGCTCAGCCCCCTTTCTCTGGACAGGGACGCTCGTTAATGTTACGGCGCCGAGAGGCCAAGATGACTATGAGCCCCGGAAAGACAGACTTACCTTCAATGGACTCTGATGCTGAACATACAAACATTTCTTCCTACCAGAGGTTGGGGCCAGGCTTCAGTATTCTTGGCGGCGAGATGTCAAATGTCACAAACACCAGTTTAGAAAAGATTCGAGCCCTGGCTGCAAATATTGACCCTCATTTGGATTTTACCAGGGATCAGGTAAGAACCGGATTTTATTTGACTTTTCTCTTTGCAGAAACGTTTGTCTATAGGAAATTGTTTATAAACTTTGACCTGGAGAATTTTGTCCAAGGCGGTCATCCTTCGACAGCAGAGTGGTCAAAGATACGCGAAAAATGTATCCaaatctacagaAAGCATATGGCCTATACTTCAGCGAATAAATCGTGTGAACAACAGAACACGTCTTTAATTTCCATTAAATACGAGGATGAATTGAAATTTATCTCCAAACTCATAACAAAAGCCAATTTGTGGATCGGCCTTACTCGGGACTCACCAACCGGTAAATGGCATTGGGGTGATGGACGTGAATTTGTGAACCGTTACTGGTGGAATCGTGGTCAGCCTGGGAATAATATGTTTGCCTATTTCAGGGAAGGATCTTTGCGTGGGAGTTTGGGGTCAAACACGAGATTTTATATTTGTGAAAAGAAAACCACCAAGGTCTGGACATTGGTCAACAGCGACGATTATCATTTTGACGATTTGTGTGGAGTAGAAATAATGCCCAACTGCGAAGATCTGCCGTGCGAAGATGTGTGTCAATCCCACCAGGATTGCGACCAATTCGCAACAATGCTCAAcgtgtgtgtcAATATAAAGAATGTCTCACAGACAGAAAATTGTGTTTTAAAGTTGAGACGAAACATGAAACTCTACAATTTGAAAAGCAAATGCTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF19437	VCIP135_N	VCIP135 N-terminal	Domain	Interproscan
PF21403	OTU1_UBXL	OTU1, UBXL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR039087	Family	Deubiquitinating protein VCPIP1	Interproscan
IPR045827	Domain	Deubiquitinating protein VCPIP1, N-terminal	Interproscan
IPR048857	Domain	OTU1, Ubl domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168	Biological Process	Golgi reassembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-