Gene detail

Detailed information of pred2_24244.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_24244.1	PROTEIN CBG26694	Sc3x4tf_639	1302167	1317088	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_24244.1

ATGACAAATTGGACCAATTTGAATCGCATGTGTCACGTGATAGTTTGCCGCGAAAAATCGTACTTTTGTTTTGATTTCATTCGCGGAAGAAGAAACTTTTCGTCTCCATTATTTCAACAACGACAAACACAAAGATTTCCCTCTTCTCATCGAGAAATAATGAATTCGTCACATTTGAAATCGAATCGTGGAAAATTGATTGTATTTGAAGGACTTGACAGATGTGGGAAAACCACACAAAGCAGAAAACTTAAAGAAGCTTTGGAAAAAGATGGTAAACCTGTAGATCTGTGGTCCTTTCCCGATGGGGAAAACTACACAACACAGCAGTTAGGCTGCACATCGACTGTCCCGCCGGTAACCCAGTGGCATCGCCGTATACCATTTCATGTACAGAAAGATGTTGAGGCGGAGATTACACGCCTCGAACAACTAGATGTCATAGAAAGGGTTGCAGGCCCCACGCCCTGGGTGAGCCCCGTAGTACTAGTCCCCAAGAAGACAGGTGGGGTGAGGGTGTGTGTTGACATGCGGAAGGCGAATGAGGCCATTCAGAGGGAGAAGCACCCCATGCCGACAGTCAATGACCTCATTGCCAACCTAAACTCCTCCAGTCTTCAGCAAACTGGACCTCTTGAATTGGAGGAATCTTGCCGGTATATAACAACCTTCACCACACATGCAGGGTGGTTAGCGAAGTCCGCTCGTTCTTGGGCATGGCCCAGTATGTCTCCAGATTCATTCCCCGATACGCAACCATCAGCGAGCCCCTGCAATGGCTCACGAGGAAAGACGTCCCATGGAGGTGGTTGGAAATTGAGCAGCAGGCAAATGCTGACGGGGGCCGGTGTCATGACCTATTTCGACCCCAAGAAAACAACAGAGGTCATTGTGGACGCAAGCCCTGTGGGAGTAGGTGCAGTCCTCACACAAGAGGGCAGAGTTCTCAACTATGCGAGCCAAGCACTCACAGAAGTGGAACAGCGCTACTCCCAAACAGAGAGTGAAATGCTAGTGGTAGTATACGCAGCAGAACACTTCCACATATACCTATACTGGTCGAAATTTGTCATCACCACCGACCACAAGCCGCTCCTGGGCATTGTCAGGAGCCCAAGGCCAGCCACAACCCGGATAGAACGCTGGAGACTACGCCTCATGCCATATGAGTACGAGCTGACATATCGCCCTGGGAAGGACCACCTCAATCCGGTGGACTACCTTAGCCGACACCCTCATCAACAACCCATGAGAGACAACAAGGCAGAGGAGTACATCAGGTACGTGACGAGAAATGCAGTCCCCAAGACACTGACCCTGGGAGAAAACGAGCTCTCAATCTCGGATGGCGTCATCCTTAGGGGCCATCGCCTAGTGGTCCCAGCGTCACTGCAGGGAAAGGTTGTAGACATCGCCCATCACACACACATGGGGATTGTCAAAACCAAGCAGCTGATCAGGGAGAAGGTCTGGTTCCCAGAGATCGACAAGATGGTGGAAGAAACCATCCGGGCCTGCATCCCGTGCCAGGCCAAGACCAGCAGTATGGTGACAGCCGAACGAGGGGACCACCAAGTCACACGCAACTCCTCATTCTTCAAGCGGGTACAGACCAACACCCTCCCACATGAAGAAGAGGAGGAATTTGAAGACTACCCTCAAAACACGTGGACTCCTGAGCAAGTCAGGCTGCCAGCCACACCCCACACCGTTTCGGTGCAGCAGACGACACCCCATACCATTTCGCTGTCATCAACACATCCGAGGGACACTACCACAGCAACAGAAAGCAACCAGCAGAGCAGACACAATCGAAAGACAACACTTGGAGGTGTGATTAACGATTACTTGAGTAAAAAAGTGGAATTTGATGATCAAGCCATTCACCTCATCTTCTCTGCAAACAGATGGGAGAAAGTACCCAAATTAATAAATCTCCTCAAGTCAGGAACGACTGTGATAATCGACCGTTATGCTTTCTCTGGAGTTGCCTATTCTGCTGCGAAAGGGTTGCCATTAGAATGGTGCAAACAACCTGATGTTGGACTTCCTCAACCAGATTGCGTCATCTTTCTGCAACTCGACTCGGATGTCATGGCCAAAAGGGCCGGATTCGGAGACGAGCGATATGAAAAGGCACAATTCCAGGAAAAAGTCTTTGAACAATTCTTGCAGATTAAAGATGAAAAATGGAAGGTCCTTGATGCGGACCAAAGTATAGAAGATTTACATCAAGTCATCTACGAACACATCAAATCAATCAAAGGAGAAAAAGACTTGCAGCGTTTGTGGACAAAA

Transcript

pred2_24244.1

ATGACAAATTGGACCAATTTGAATCGCATGTGTCACGTGATAGTTTGCCGCGAAAAATCGTACTTTTGTTTTGATTTCATTCGCGGAAGAAGAAACTTTTCGTCTCCATTATTTCAACAACGACAAACACAAAGATTTCCCTCTTCTCATCGAGAAATAATGAATTCGTCACATTTGAAATCGAATCGTGGAAAATTGATTGTATTTGAAGGACTTGACAGATGTGGGAAAACCACACAAAGCAGAAAACTTAAAGAAGCTTTGGAAAAAGATGGTAAACCTGTAGATCTGTGGTCCTTTCCCGatggggaaaactacacaacacagcagttaggctgcacatcgactgtcccgccggtaacccagtggcatcgccgtataccatttcatgtacagaaagatgttgaggcggagattacacgcctcgaacaactagatgtcatagaaagggttgcaggccccacgccctgggtgagcccCGTAGTACTAGTCCCCAAGAAGACAGGTGGGGTGAGGGTGTGTGTTGACATGCGGAAGGCGAATGAGGccattcagaggGAGAAGCACCCCATGCCGACAGTCAATGACCTCATTGCCAACCTAAACTCCTCCAGTCTTCAGCAAACTGGACCTCTTGAATTGGAGGAATCTTGCCGGTatataacaaccttcaccacacatgcagggtggttagcgaagtccgctcgttcttGGGCATGGCCCAGTATGTCTCCAGATTCATTCCCCGATACGCAACCATCAGCGAGCCCCTGCAATGGCTCACGAGGAAAGACGTCCcatggaggtgGTTGGAAATTGAGCAGCAGGCAAATGCTGACGGGGGCCGGTGTCATGACCTATTTCGACCCCAAGAAAACAACagaggtcattgtggacgcaagccctgtgggagtaggtgcagtcctcacacaagagggcagagttctcaactatgcgagccaagcactcacagaagtggaacagcgctactcccaaacagagagtgaaatgctagtggtagtatacgcagcagaacacttccacatatacctatactggtcgaaatttgtcatcaccaccgaccacaagccgctcctgggcattgtcaggagcccaaggccagccacaacccggatagaacgctggagactacgcctcatgccatatgagtacgagctgacatatcgCCCTGGGAAGGACCACCTCAATCCGGTGGACTACCTTAGCCGACACCCTCATCAACAACCCATGAGAGACAACAAGGCAGAggagtacatcAGGTACGTGACGAGAAATGCAGTCCCCAAGACACTGACCCtgggagaaAACGAGCTCTCAATCTCGGATGGCGTCATCCTTAGGGGCCATCgcctagtggtcccagcgtcactgcagggaaaggttgtagacatcgcccatcacacacacatggggattgtcaaaaccaagcagctgatcagggagAAGGTCTGGTTCCCAGAGATCGACAAGATGGTGGAAGAAACCATCCGGGCCTGCATCCCGTGCCAGGCCAAGACCAGCAGTATGGTGACAGCCGAACGAGGGGACCACCAAGTCACACGCAACTCCTCATTCTTCAAGcgggtacagaccaacaccctcccacatgaagaagaggaggaatttgaagactaccctcaaaacacgtggactcctgagcaagtcaggctgccagccacaccccacaccgtttcggtgcAGCAGACGACACCCCATACCATTTCGCTGTCATCAACACATCCGAGGGACACTACCACAGCAACAGAAAGCAACCAGCAGAGCAGACACAATCGAAAGACAACACTTGGAGGTGTGATTAACGATTACTTGAGTAAAAAAGTGGAATTTGATGATCAAGCCATTCACCTCATCTTCTCTGCAAACAGATGGGAGAAAGTACCCAAATTAATAAATCTCCTCAAGTCAGGAACGACTGTGATAATCGACCGTTATGCTTTCTCTGGAGTTGCCTATTCTGCTGCGAAAGGGTTGCCATTAGAATGGTGCAAAcaacctgatgtTGGACTTCCTCAACCAGATTGCGTCATCTTTCTGCAACTCGACTCGGATGTCATGGCCAAAAGGGCCGGATTCGGAGACGAGCGATATGAAAAGGCACAATTCCAGGAAAAAGTCTTTGAACAATTCTTGCAGATTAAAGATGAAAAATGGAAGGTCCTTGATGCGGACCAAAGTATAGAAGATTTACATCAAGTCATCTACGAACACATCAAATCAATCAAAGGAGAAAAAGACTTGCAGCGTTTGTGGACAAAATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02223	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018094	Family	Thymidylate kinase	Interproscan
IPR018095	Conserved_site	Thymidylate kinase, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039430	Domain	Thymidylate kinase-like domain	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004798	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006233	Biological Process	dTDP biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-