Gene detail

Detailed information of pred2_18452.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_18452.1	AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED	Sc3x4tf_795.1	457257	501791	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_18452.1

ATGAGTTATCGCCCTTCTACTTGTGTCAGTCACGTTGCACGTCAGACTAGCAACAAAAGAGAGAGACTTAGTTCTAAACCCAAATCTCCGTGTTCTGGTTGTGGACAATCGCATTGGAAGAGCGAAAATACAGCTAAAGCAGAATTACATCCTTGGGGATGGCCTAGTCAACCCTGGCACCGCTTGCAACCCGTGCAAGACAATCATCTTTTGGTTGTAGTGGACGCACACTCAACATGGGTGGATATTTTCCCCACCGAGGGTCCTAGTGCTAAAGAAACTATTAAAAACCTGCGTCATAGTTTCTGTCAAATGGGTTTTTCCGTTTCTATTGTGTCTGACAATGGTCCTTGCTTCACCAACTTGTTAAGTCCTAGTGACCACGTAGATGGTCGCGTAATACGGCAACAAGAGAATCAGAAGAGAAACTACACTTCTTCACCTAGAATGCTAGATCTACAACCTAATGCACCGATCGCTGTGCGCAACTATGCGCTAGGTCCTAAGTGGATACCTTCTCAAGTAACCGAACGTACAGGTCCCCTTTCATATAGATGTCAGCTTACAGATGGCGGCATCATCAAACGTCACCAAGATCAGATCATCACAAGATCGTTACAGAACAGGGAGTTGCTAGAAGCGAAAGAAAGTTTCAAATCTGAAATGGCTCGCAGCGGAAAAGAATCGTTGCAAAATGATGAAGAGTTCATTGAGCCAAGCCAATCGGCGAGACACTCGAAAAGAATACATGACTGGTATTTGATGGAACCAGAAGAACTGCGGCAAGATGGAATGGGATATGTCAAAAGAACAAGAATTATCCCGAATGAAAAATCTTTCATAATTATCAGTATGAAAAATAATCAAAGTTCTGGCTGCAACTGTCGGAGAGTCAAAAACAGTTTTCGGATCCCGAGGCGACGACACTACAGAGTATCCGGTCGGGAGAGGATCATCGGTGTACGAAGGAAAAGGGTCGAATGGACGAACAGGGCAAGGTCATCTGAGGTAGAATTAACTGGATCGGAAGAAGAATTTTCAGACGACCAACTAAAGAAGCCATGTCCGGACAATGGTCAAAAGTATAAAAACTCCAGTGAAGACGGAATTTTCTGTTTCCAAAAACTATGGATGGACAAAATAACCTCGGAAAAACCGAAGCTGGTTATTTCGGAGTTTATGAATGAAACATCTTTGCATGGGATCAGACAGACATGGCAAGGACCACCAATGAGACGGTTGTTCTATTTCTGTCTGGTTGTGTCGATGGCCTGCTTCCTCGCCCATGTTCTGATAGACACCTTTGTTGATTACCGCCAGTTTCCCTACACTCAACAATACACAGCGAGCATTAACAATGAATTGAACTTCCCCGGCATCACTGTGTGTAATCTCAACAATAACAGACTGGAGAAAGACATGCGTCGGATGGGTAACTGGACAGCCGAGGACTACTACAACCGCTATTACGACAGCATTCACCTTATTCGATGTACATTCGGTCAAAGGAACTGCACGGGAGACTGGGTGAAAAAATTTATTAGCCTCCGAGGAGAAGAGAACCTCTGTCTTGTTTTCAATGTGGTGCTTGACCCAACCGAGAAAGAAACTTTTAAAATTTCTGAGTTAGGAATTTTAAATGGTCTTTCAGTTGTTCTTGCTCTAAAGTCACAGGATCATGCTGAACTCTCGTATGGGGTCATCGTTTATTTACATGAATCAGGTTTACTTCCGACGGAATACGAAGCCACCTTCGTCGCAGCGCCCGGTTATTCGACTTACGCTGTTATCACTCCCGAAAAGATGACTGTGCTGGGAAAGCCTTACCGATCGGAAGTTTGCATCGAATCACCACCATATGGATATAATTTGGCTCAGTGTGAAAGAAATTGTGCTTACAAATATGTGGAATCCCAATGTAAATGCCAGCTCCCTTTTGCACCTGGTATTTTCCTTACCAAGAACGATTTATTGGCGAAATGCAAGTGTCTAAGACGTTGTTCGTCTATTTTTTATCACACTCAGATTTCGACTGCCTATCGCCCAAGGAACAAAACCTTGCCAAATCACATGGAAGTAAACATATACTACCAAACGCTGGTCATGAAAGAAGTGAAAGAAGTTCCCAAGCATTCACTAGACAAAATAATATCGCAGTTTGGAGGTCAAATGGGAATATTCTTGGGTTCCAGTATCGTCACCGTCTGTGAAATCATGGAAGTTACTTTGAAACTGGTTCTGCAAACTCTCTGCTACCTCTTTTCAACACAAGTCTTCCCCCACAGGGACCAGCGA

Transcript

pred2_18452.1

ATGAGTTATCGCCCTTCTACTTGTGTCAGTCACGTTGCACGTCAGACTAGCAACAAAAGAGAGAGACTTAGTTCTAAACCCAAATCTCCGTGTTCTGGttgtggacaatCGCATTGGAAGAGCGAAAATACAGCTAAAGCAGAATTACATCCTTGGGGATGGCCTAGTCAACCCTGGCACCGCTTGCAACCCGTGCAAGACAATCATCTTTTGGTTGTAGTGGACGCACACTCAACATGGGTGGATATTTTCCCCACCGAGGGTCCTAGTGCTAAAGAAACTATTAAAAACCTGCGTCATAGTTTCTGTCAAATGGGTTTTTCCGTTTCTATTGTGTCTGACAATGGTCCTTGCTTCACCAACTTGTTAAGTCCTAGTGACCACGTAGATGGTCGCGTAATACGGCAACAAGAGAATCAGAAGAGAAACTACACTTCTTCACCTAGAATGCTAGATCTAcaacctaatgcACCGATCGCTGTGCGCAACTATGCGCTAGGTCCTAAGTGGATACCTTCTCAAGTAACCGAACGTACAGGTCCCCTTTCATATAGATGTCAGCTTACAGATGGCGGCatcatcaaacgtcaccaagatcagatcatcacaagATCGTTACAGAACAGGGAGTTGCTAGAAGCGAAAGAAAGTTTCAAATCTGAAATGGCTCGCAGCGGAAAAGAATCGTTGCAAAATGATGAAGAGTTCATTGAGCCAAGCCAATCGGCGAGACACTCGAAAAGAATACATGACTGGTATTTGATGGAACCAGAAGAACTGCGGCAAGATGGAATGGGATATGTCAAAAGAACAAGAATTATCCCGAATGAAAAATCTTTCATAATTATCAGTATGAAAAATAATCAAAGTTCTGGCTGCAACTGTCGGAGAGTCAAAAACAGTTTTCGGATCCCGAGGCGACGACACTACAGAGTATCCGGTCGGGAGAGGATCATCGGTGTACGAAGGAAAAGGGTCGAATGGACGAACAGGGCAAGGTCATCTGAGGTAGAATTAACTGGATCGGAAGAAGAATTTTCAGACGACCAACTAAAGAAGCCATGTCCGGACAATGGTCAAAAGTATAAAAACTCCAGTGAAGACGGAATTTTCTGTTTCCAAAAACTATGGATGGACAAAATAACCTCGGAAAAACCGAAGCTGGTTATTTCGGAGTTTATGAATGAAACATCTTTGCATGGGATCAGACAGACATGGCAAGGACCACCAATGAGACGGTTGTTCTATTTCTGTCTGGTTGTGTCGATGGCCTGCTTCCTCGCCCATGTTCTGATAGACACCTTTGTTGATTACCGCCAGTTTCCCTACACTCAACAATACACAGCGAGCATTAACAATGAATTGAACTTCCCCGGCATCACTGTGTGTAATCTCAACAATAACAGACTGGAGAAAGACATGCGTCGGATGGGTAACTGGACAGCCGAGGACTACTACAACCGCTATTACGACAGCATTCACCTTATTCGATGTACATTCGGTCAAAGGAACTGCACGGGAGACTGGGTGAAAAAATTTATTAGCCTCCGAGGAGAAGAGAACCTCTGTCTTGTTTTCAATGTGGTGCTTGACCCAACCGAGAAAGAAACTTTTAAAATTTCTGAGTTAGGAATTTTAAATGGTCTTTCAGTTGTTCTTGCTCTAAAGTCACAGGATCATGCTGAACTCTCGTATGGGGTCATCGTTTATTTACATGAATCAGGTTTACTTCCGACGGAATACGAAGCCACCTTCGTCGCAGCGCCCGGTTATTCGACTTACGCTGTTATCACTCCCGAAAAGATGACTGTGCTGGGAAAGCCTTACCGATCGGAAGTTTGCATCGAATCACCACCATATGGATATAATTTGGCTCAGTGTGAAAGAAATTGTGCTTACAAATATGTGGAATCCCAATGTAAATGCCAGCTCCCTTTTGCACCTGGTATTTTCCTTACCAAGAACGATTTATTGGCGAAATGCAAGTGTCTAAGACGTTGTTCGTCTATTTTTTATCACACTCAGATTTCGACTGCCTATCGCCCAAGGAACAAAACCTTGCCAAATCACATGGAAGTAAACATATACTACCAAACGCTGGTCATGAAAGAAGTGAAAGAAGTTCCCAAGCATTCACTAGACAAAATAATATCGCAGTTTGGAGGTCAAATGGGAATATTCTTGGGTTCCAGTATCGTCACCGTCTGTGAAATCATGGAAGTTACTTTGAAACTGGTTCTGCAAACTCTCTGCTACCTCTTTTCAACACAAGTCTTCCCCCACAGGGACCAGCGATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00858	ASC	Amiloride-sensitive sodium channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001873	Family	Epithelial sodium channel	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11690	AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005272	Molecular Function	sodium channel activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006814	Biological Process	sodium ion transport	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0015280	Molecular Function	ligand-gated sodium channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0035725	Biological Process	sodium ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-