Gene detail

Detailed information of pred2_17472.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_17472.1	MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS	Sc3x4tf_4264.1	4290	16683	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_17472.1

ATGTTTATGAAGCTCTGTCAGCATAATAAGAAGCATCAACTCGCCAAGATTAGCATTCACACCTCGGATGTTCCACTGTATGATGTTGTTCACCATGGTTTAAAAATGCAAGTTTGGGAAATGGCGTCGTCCTTAGCACTCAAACAGCGAGCGCCAACTGTTTTCTTATCACTCGAAGGAAAAGCCAGAGAAGCTGTCCTGGAGATGGATATTACCTCCTTAAACGAAAATGATGGAATGCAAAAGCTGTATGAAAAATTGGATACACTCTTTTTAGAAGACTCAAATCAGTCGGCTTTTATAGCATACATATCATTTGAACAGTACAAAAGGGGGAGGCACGTGTCAGTAACTGACTACCTTATCCAGTTCGATCGACTAGTCGCAAAACTTAAGGATTACAAAATAATTTTACCAGAACCAGTACTTGCTTTAAGAGCATTAAAAAGTGCACACCTGGCACCAGAAGACGAACGACCTGATTATAAGACATTTGAATGCTACATATGTGGCTGCAATTTCCACTGGGCTAAGGATTGTCCGTACGCTGATAGCACTAGACATGGACAACAAAATCGAACAGATAACTATGTATCTATAGTGTTGATGAATCAACAAAAACAAGAGCACAATGGTCCCACATTTTTGGGTGAAACGCTAGGCTCTGCCGTCCTAGACAGTGGTGCTTCTGGAACTGTGTGCAGGACAAAGTGGTATGAATGTTTTTTAGAAACATTGCCAGAGCTAGTGAAAAAAAAAATAAACATCCAAGAAGGAATAAGGAGTTACAAGTTTGGTAATGGAGAAAAATTAAAATCTCTATACAATGTCACTCTACCCTGTGTAATTGCCGATATCAAAGTTGATATTATTACTGATAGAGCAAAAACATGCCTAAATTTTGAAAATGACAGTGTAATGATGTTGGGAAGAAAAATTCACTTGAATTACACTTTGTCTGGTCATTACCACATTCCCATTCTACCGGACAGAGGTAAGTCAAATCGAATTTTATTTATTAAAGAAATTACCACTAAAAACAGATTAGAAAAAATAAAAATTGCCACTAAGCTACATAGACAATTCAGTCATCCCAGTGGTAAAAAGTTATGTGATCTAGTTAAGGATGCAGGAATAAGAGATGTAGAATTTATGAAGATTTTACAAGAACTTCCTAATTCTTGCGAAATATGTATCCGATACAAGAAGACTGAACCCAGACCCATTGTTGGGTTCTCACTAGGATCGTATTTTAATGAAACTGTTGCCATGGACATTAAAGAAATTAAAGGCAATAAAGTACTGCACCTTGTAGATCATGGAACCAGATATAGTGAAAGTTCTAATATCCTTTCCGACATCTTCAAACACTGGATAGCATATTTTGGGACTCCAGGTTCTATTCTGACAGATAATGGCAGAGAATTCGATAATCAATCATTTTGGGACATGGCACAAAACCTGAATGTTGTGGTACATACCACTGCTGCTCAAAGTCTGTGGAGCAATGGGTTAAATGAACGACATAATGGAGTATTGGGAGAAATGGTAAAGAAATCCATTGAAGATACAGGTTGTTGTTTGGAAGTAGCCCTAGCATGGGCCATAAGTGCCAAAAATGCACTTCATAGTGTGCATGGATGGCTCGGTCCAGAAACTGTCATAGGCTGGGAGCATAAACAAGTGCTTTTTAAACATGGAGGCACATATGTAAGAGTGCATCCATGCCGCTTAGTGTCCTACCCGGAAGCATATGAAAGTTCTTCAGAAGATAAGAATGATGAACTTAACACCCCACAAAAGGGTGTGATGAAACTTCAAAAATACCCATTTGTGAAGAAAACGATATGGATGACAGCGATATGGATAGCAGATGACAGCGTTGAACAGCATCAAACTATGAGAAGAGGTATACCACTGAAACAAAAATCTATTCCAAAAACAATTGAGCTTCCCAAACCAGGACAAACTATTAAATGCAGACTTGCAAATGACGAGGATCCAGAATGGAGAAAATTGAATGTTATAAGCAGGGCAGGGAAAGCAAAAGGCAAAAACAAGTATTTGTTGAATGTGGTTATGGAACAAGGTGAACCATTTTGGTTAGATTTTGAGCATGGAGTATCAAAATGGCAAGCAAATGAGGTTGAACAAATAAGAGAAGCTGAACACACTTCTGGGGATGAGGAAAATATAATGATTTCCTCCTCAAATGATGACATAGCCAAGGCAAAGGAAGGGGAACTTCAAAGCTGGATTGAAAATCAGGTTTATACACAAGTACCTGACCAAGGTCAACCCCAAATATCGACAAGATGGATTTATACTAATAAAAAGTCTAATGGCAAACAAATCTATAAGGCTAGACTTGTGGCGAGAGGCTTTCAGGACAGAAATGCAAATAATATTAGAAATGATTCTCCCACATGTTCTAAAGAGGGTCTACGTATAGCTTTAGGAATAATGGCATCTCATGAGCAAGCAATTGGTTTATTTAGATCCTCCTCAAGAGGCCAATGTGTCTCCAGGTTACGATCCTGGTACCCGACCATCAGAGAGGAATTGATGAAGTTAGAAGCAGTAGCTTCAAAATATGATCAGACAATATTCACATGGTATTGTGGAAACAAACTGCATGGCATAATCGCTACTCATGTTGATGATTTCTGCTTTGCAGGGTCAGAGATATTTCATACCAGAGTTATACACAGGCTTCATAACTTATTTAAAGTTAAGTCTCAAGAAGTAGTAGTGTTCCAATATGTTGGATTAGATGTAAAGAAGAATGGAGAGAATAATGTTAAACTCGGACAGGATGAATATATCAAGAAATTAAAATATATCCCAGTAGAAGATCAACTAAATTGGCTAGCCACACAAACCAGATCTGATCTGAGCTACGATGTTAGTGCATTAAGCTCCATACTTAAAAAAGAGAATGTAGAATGCATAAAACAAGTTAATAGAACAGTCAAGAAANGTTGTGTGAATTGTGTAAGATGGTCTCATAGCGGAAAGCACCTGGCATCTGGCGGTGATGATAATTTGGTGATGATTTGGCAAACTAGCCGGTATGGAGGACCGTCAACTGTATTTGGTAGTGGTGGTAAGATGGTCAACATTGAGCAATGGAGGCCTGTGTCCACGTTAAGAGGACATACTGGAGCTTACTATCAATCCTATATTTCAAAGTCG

Transcript

pred2_17472.1

ATGTTTATGAAGCTCTGTCAGCATAATAAGAAGCATCAACTCGCCAAGATTAGCATTCACACCTCGGATGTTCCACTGTATGATGTTGTTCACCATGGTTTAAAAATGCAAGTTTGGGAAATGGCGTCGTCCTTAGCACTCaaacagcgagcgccaactgttttcttatcactcgaaggaaaagccagagaagctgtcctggagatggatattacctccttaaacgaaaatgatggaatgcaaaagctgtatgaaaaattggatacacTCTTTTTAGAAGACTCAAATCAGTCGGCTTTTATAGCATACATATCATTTGAACAGTACAAAAGGGGGAGGCACGTGTCAGTAACTGACtaccttatccagttcgaTCGACTAGTCGCAAAACTTAAGGATTACAAAATAATTTTACCAGAACCAGTACTTGCTTTAAGAGCATTAAAAAGTGCACACCtggcaccagaaGACGAACGACCTGATTATAAGACATTTGAATGCTACATATGTGGCTGCAATTTCCactgggctaagGATTGTCCGTACGCTGATAGCACTAGACATGGACAACAAAATCGAACAGATAACTATGTAtctatagtgttGATGAATCAACAAAAACAAGAGCACAATGGTCCCACATTTTTGGGTGAAACGCTAGGCTCTGCCGTCCtagacagtggtgcttctggaactgtgtgcaggacaaagtggtatGAATGTTTTTTAGAAACATTGCCAGAGCTAGTGAAAAAAAAAATAAACATCCAAGAAGGAATAAGGAGTTACAAGTTTGGTAATGGAGAAAAATTAAAATCTCTATACAATGTCACTCTACCCTgtgtaattgccgatatcaaagttgataTTATTACTGATAGAGCAAAAACATGCCTAAATTTTGAAAATGACAGTGTAAtgatgttgggaAGAAAAATTCACTTGAATTACACTTTGTCTGGTCATTACCACATTCCCATTCTACCGGACAGAGGTAAGTCAAATCGAATTTTATTTATTAAAGAAATTACCACTAAAAACAGATTAGAAAAAATAAAAATTGCCACTAAGCTACATagacaattcagtcatcccagtggtaaaaagttatgtgatctagttaaggatgcaggaataagagatgtagaatttatgaagattttacaagaacttcctaattcttgcgaaatatgtatccgatacaagaagactgaacccagacccattgttgggttctcactaggatcgtattttaatgaaactgttgccatggacattaaagaaattaaaggcaatAAAGTACTGCACCTTGTAGATCATGGAACCAGATATAGTGAAAGTTCTAATATCCTTTCCGACATCTTCAAACACTGGATAGCATATTTTGGGActccaggttctATTCTGACAGATAATGGCAGAGAATTCGATAATCAATCATTTTGGGACATGGCACAAAACCTGAATGTTGTGGTACATACCACTGCTGCTCaaagtctgtggagcaatgggttaAATGAACGACATAATGGAGTATTGGGAGAAATGGTAAAGAAATCCATTGAAGATACAGGTTGTTGTTTGGAAGTAGCCCTAGCATGGGCCATAAGTGCCAAAAATGCACTTcatagtgtgcatggATGGCTCGGTCCAGAAACTGTCATAGGCTGGGAGCATAAACAAGTGCTTTTTAAACATGgaggcacatatGTAAGAGTGCATCCATGCCGCTTAGTGTCCTACCCGGAAgcatatgaaaGTTCTTCAGAAGATAAGAATGATGAACTTAACACCCCACAAAAGGGTGTGATGAAACTTCAAAAATACCcatttgtgaaGAAAACGATATGGATGACAGCGATATGGATAGCAGATGACAGCGTTGAACAGCATCAAACTATGAGAAGAGGTATACCACTGAAACAAAAATCTATTCCAAAAACAATTGAGCTTCCcaaaccaggacaaactattaaatgcagacttgcaaatgacgaggatccagaatggagaaaattgaatgttataagcagggcagggaaagcaaaaggcaaaaacaagtatttgttgaatgtggttatggaacaaggtgaaccattttggttagattttgagcatggagtatcaaaatggcaagcaaatgaggttgaacaaataagagaagctgaacacacttctggggatgaggaaaatataatgatttcctcctcaaatgatgacatagccaaggcaaaggaaggggaacttcaaagctggattgaaaatcaggtttatacacaagtacctgaccaaggtcaaccccaaatatcgacaagatggatttatactaataaaaagtctaatggcaaacaaatctataaggctagacttgtggcgagaggctttcaggacagaaatgcaaataatattagaaatgattctcccacatgttctaaagagggtctacgtatagctttaggaataatggcatctcatgAGCAAGCAATTGGTTTATTTAGATCCTCCTCAAGAGGCCAATGTGTCTCCAGGTTACGATCCTGGTACCCGACCATCAGAGAGGAATTGATGAAGTTAGAAGCAGTAGCTTCAAAATATGATCAGACAATATTCACATGGTAttgtggaaacaaactgcatggcataatcgctactcatGTTGATGATTTCTGCTTTGCAGGGTCAGAGATATTTCATACCAGAGTTATACACAGGCTTCATAACTTATTTAAAGTTAAGTCTCAAGAAGTAgtagtgttccaatatgttggattagatgtaaagAAGAATGGAGAGAATAATGTTAAACTCGGACAGGATGAATATATCAAGAAATTAAAATATATCCCAGTAGAAGATCAACTAAATTGGCTAGCCACACAAACCAGATCTGATCTGAGCTACGATgttagtgcatTAAGCTCCATACTTAAAAAAGAGAATGTAGAATGCATAAAACAAGTTAATAGAACAGTCAAGAAANGTTGTGTGAATTGTGTAAGATGGTCTCATAGCGGAAAGCACCTGGCATCTGGCGGTGATGATAATTTGGTGATGATTTGGCAAACTAGCCGGTATGGAGGACCGTCAACTGTATTTGGTAGTGGTGGTAAGATGGTCAACATTGAGCAATGGAGGCCTGTGTCCACGTTAAGAGGACATACTGGAGCTTACTATCAATCCTATATTTCAAAGTCGTAA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031120	Family	WD repeat HIR1-like	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13831	MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000417	Cellular Component	HIR complex	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006325	Biological Process	chromatin organization	Interproscan
GO:0006336	Biological Process	chromatin organization	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-