Gene detail

Detailed information of pred2_16975.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_16975.1	VESICULAR MANNOSE-BINDING LECTIN	Sc3x4tf_120	1180767	1118771	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_16975.1

ATGGCTGTCGTAAGTTCACGCTGGTGTCCAGCTGTCCTGTTTGAGGTGGTTTTTATCCTCATCCTGTGTTTCAACATTGTCATCTCTTCGTCCACGGCACCCCGGTTGAAGTTCGAGTACAAGCTCAGCTTTAAAGGTCCACATTTAATCCAAAAGGATAAGGGAATTCCATTCTGGGAACACGGAGGAGCTACCAGTTTCTATGAACGATTCCATGCCAGTGACGCACAACAAGAGTCCAATCTTAGCGTTCTTGGAGAGAAGAAATCCATGGGTGTCAGCATTGTGGTAGAATTAAGACAGAAATTACAATCCATCATTCGTGTTGAAAATTATGAACTTGAACAATTGTACAATGCTGATAAAAGTGGATTGTTTTGGAGTGCATTGCCGGACATTGTGCCTACCAAGGAAAAGCCGGCATCGGCACATAAAGTGCAGAAGGATTGCATTACGATTGTTCTTTGCGTCAATGCCACGAGGACTCCTGAATTACCGCTTGTCTACATTGGGCGTTATGCTAATCCACGTTGCTTCAAGAACTGTGAAAAGAACTCGTTTCCCATGAAGTACAAATCACAAAACAAGGCATGGATGACATATCTACTTTTTTCATCCTGGTTTCTGGAAGAATTTGTACCTGCCGTCCCGATCACATTTAGCAAATGCTGGACTCAAACAACCCATTTAGAATCACCAGGTGGGGCTCTCAAGTATTTGTTTTTCTCACCGAACACCACATCAGAGCTACAGCTGCTCGATCAGGGAATCCTCGCAACAATGAAAAAATATTATTGCTGTGACATGTTGCGTGCCGTCATTGCTGGGGGCAGTGCAGACAAAGGATTGTCGCAAATTATCAAGTCATTCACAGTCAAGGAAGCTTTGTCCATGATCGCTGACAGCATCAAGTCACAAGATGCCATACCTGGAGATGACAATGTTCGAATCACACCCTCCCTTAGAAGTAAGAAAGGTTGGGTATGGAGTAGAAACTCCGTTCCACATGACAACTGGGTAGTTGAAGTGGCCTTCAGGGTAACTGGTCGTGGCCGTGTTGGCGCTGATGGATTGGCCATTTGGTACACCCAAGAGAAAGGTGTTGAGGGTCCAGTGTTCGGCAGCAATGACAAATGGAATGGCCTGGGAATTTTTTTCGATTCCTTTGACAATGATGCTCAGCGCAACAATCCTTACATTCTGGTGATGCTAAACAATGGCACCCGAGAATATGATCACATGAATGATGGTCATGACCAACAGCTTGGTGGCTGTTTGCGGGATTTCAGAAATAAACCTTTTCCTCTCCGTGCTAAAATTGAATACTACAAGAATGCTCTCACTTTGTTTATCAACAATGGTATGTCTAGTAACCAAGAGGAATACGAACTGTGTATGAGGACAGAAGGTGTCCAGCTTCCCAAGAATGGCTTCTTTGGCATCACCGCAGCAACTGGGGGATTAGCAGATGACCATGATGTCCTTGCCTTTCTGACCCATTCCATGCACCCCCCTGCTGACCAGTTTGAAAGCCAAGGAGAACGTGAATTGAAACAGATCTTTGAAGGCCAGAATAACATGTTCCATTCATTACGTGAATTGAATAAACGTTTGGATGAATTACACGGACGACAAGAGCTGATTTTATCTAAAGTCAGTTCGGGCGTTGGAGGTGTCCAGATGGTTCAACAGGGTCAGGGCCAACAACCAATTGCAATTCCCGATACAATCAAAAGACACGAAGTGGATATGGTCATTGGAAACCAGAATGACATTCGGAGTCAAATGATCGACATCAAAGAATTGATCTCCCAATTAAAAGATAAAGCTGATCGTATGTCCGGGGGAGGTGGTGGCGTCAATATGGACCTGCAGATGGCAATTCATGAAGTTAAAGATCACGTGAGACAGGTCCGTGAGGACACATCACATATATTAAAAGCACCACAGGCAAAACAAAGAAGCACAAGCCAAGAAATTTTATTAAATGTCAAAATGTTGGAAGCTTTAAGAAATGTG

Transcript

pred2_16975.1

ATGGCTGTCGTAAGTTCACGCTGGTGTCCAGCTGTCCTGTTTGAGGTGGTTTTTATCCTCATCCTGTGTTTCAACATTGTCATCTCTTCGTCCACGGCACCCCGGTTGAAGTTCGAGTACAAGCTCAGCTTTAAAGGTCCACATTTAATCCAAAAGGATAAGGGAATTCCATTCTGGGAACACGGAGGAGCTACCAGTTTCTATGAACGATTCCATGCCAGTGACGCACAACAAGAGTCCAATCTTAGCGTTCTTGGAGAGAAGAAATCCATGGGTGTCAGCATTGTGGTAGAATTAAGACAGAAATTACAATCCATCATTCGTGTTGAAAATTATGAACTTGAACAATTGTACAATGCTGATAAAAGTGGATTGTTTTGGAGTGCATTGCCGGACATTGTGCCTACCAAGGAAAAGCCGGCATCGGCACATAAAGTGCAGAAGGATTGCATTACGATTGTTCTTTGCGTCAATGCCACGAGGACTCCTGAATTACCGCTTGTCTACATTGGGCGTTATGCTAATCCACGTTGCTTCAAGAACTGTGAAAAGAACTCGTTTCCCATGAAGTACAAATCACAAAACAAGGCATGGATGACATATCTACTTTTTTCATCCTGGTttctggaagaATTTGTACCTGCCGTCCCGATCACATTTAGCAAATGCTGGACTCAAACAACCCATTTAGAATCACCAGGTGGGGCTCTCAAGTATTTGTTTTTCTCACCGAACACCACATCAGAGCTACAGCTGctcgatcagggAATCCTCGCAACAATGAAAAAATATTATTGCTGTGACATGTTGCGTGCCGTCATTGCTGGGGGCAGTGCAGACAAAGGATTGTCGCAAATTATCAAGTCATTCACAGTCAAGGAAGCTTTGTCCATGATCGCTGACAGCATCAAGTCACAAGATGCCATACCTGGAGATGACAATGTTCGAATCACACCCTCCCTTAGAAGTAAGAAAGGTTGGGTATGGAGTAGAAACTCCGTTCCACATGACAACTGGGTAGTTGAAGTGGCCTTCAGGGTAACTGGTCGTGGCCGTGTTGGCGCTGATGGATTGGCCATTTGGTACACCCAAGAGAAAGGTGTTGAGGGTCCAGTGTTCGGCAGCAATGACAAATGGAATGGCCTGGGAATTTTTTTCGATTCCTTTGACAATGATGCTCAGCGCAACAATCCTTACATTCTGGTGATGCTAAACAATGGCACCCGAGAATATGATCACATGAATGATGGTCATGACCAACAGCTTGGTGGCTGTTTGCGGGATTTCAGAAATAAACCTTTTCCTCTCCGTGCTAAAATTGAATACTACAAGAATGCTCTCACTTTGTTTATCAACAATGGTATGTCTAGTAACCAAGAGGAATACGAACTGTGTATGAGGACAGAAGGTGTCCAGCTTCCCAAGAATGGCTTCTTTGGCATCACCGCAGCAACTGGGGGATTAGCAGATGACCATGATGTCCTTGCCTTTCTGACCCATTCCATGCACCCCCCTGCTGACCAGTTTGAAAGCCAAGGAGAACGTGAATTGAAACAGATCTTTGAAGGCCAGAATAACATGTTCCATTCATTACGTGAATTGAATAAACGTTTGGATGAATTACACGGACGACAAGAGCTGATTTTATCTAAAGTCAGTTCGGGCGTTGGAGGTGTCCAGATGGTTCAACAGGGTCAGGGCCAACAACCAATTGCAATTCCCGATACAATCAAAAGACACGAAGTGGATATGGTCATTGGAAACCAGAATGACATTCGGAGTCAAATGATCGACATCAAAGAATTGATCTCCCAATTAAAAGATAAAGCTGATCGTATGTCCGGGGGAGGTGGTGGCGTCAATATGGACCTGCAGATGGCAATTCATGAAGTTAAAGATCACGTGAGACAGGTCCGTGAGGACACATCACATATATTAAAAGCACCACAGGCAAAACAAAGAAGCACAAGCCAAGAAATTTTATTAAATGTCAAAATGTTGGAAGCTTTAAGAAATGTGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF03388	Lectin_leg-like	Legume-like lectin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR005052	Domain	Legume-like lectin	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR051136	Family	Intracellular Lectin and Glycoprotein Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12223	VESICULAR MANNOSE-BINDING LECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005537	Molecular Function	D-mannose binding	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005793	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030134	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-