Gene detail

Detailed information of pred2_09530.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_09530.1	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	Sc3x4tf_169	2084424	2158745	+

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_09530.1

ATGGCTGAGAAGCATGAAGGCAAAGTTAGCAGCACATTGGGTGGTGATTCTATGAAGGTGATTGCTGAGTCCATTGGAATTGCTGGTCTTCCTGACGATGCTGCAAGCCAATTGGCAGAGGACGTCAGCTACAGGCTCAAACTGCTTATTCAGGAAGCTGTCAAGTTTATGCACCATGGTAAACGTAGCAAGCTGTCCATGACTGATTTTGATATGGCTCTCAGAATCAAAAACCTTGAACCATTGTATGGTTTCCAGTCAAAGGACTTCATACCATTCCGTTATACAAGTGGAGGTGGCCGTGAACTTCATTTCCATGAAGAAAAAGAACTTGATTTGAATGAAATCATCAGCAGTCAATTTCCAAAAATTCCTTTAGATGTTTCTTTGAAAATCCATTGGTTGAGCATCGAAGGTGTACAGCCTTCCATTCCTGAAAACCCACCACCAGCATCTAAAGAGCAGCAACAAAAAGAAAGCTTTGATACTTCCATCAAAGCCGTAATTGACAGACTACACAAACCCAAACCCCACACAGATTTGGCCAAAGCTAGAATGAAACACAAGAGTGCTAATACTGCAAAATTGAAAAATCTAATTATTCATGAACTTTCTGTTGAACAACAATTGTATTATAAAGAAATTACTGAAGCGTGTGTTGGGGCTGATGAACCACGGCGACAGCAAGCATTGCAAAGTTTGGTATCAGACCCAGGACTTCATCAAATGCTGCCTCGATTCAGTACTTTTATATCTGAAGGTGTTAAGATTAACGTTGTACAGAATAATCTTGCTCTTCTTATTTATCTCATGAGAATGGTGAAATCTCTCATTGATAATCCAAATTTGTACCTCGAAAAATATCTTCATGAAATTGTTCCTGCTGTGACAACATGCATTGTTAGTAAGCAACTCTGCTTGAGACCAGATCTTGATAATCACTGGGCACTTCGGGATTTTGCAGCCAGGCTCATGAATAACATCTGCAGGACGTTCAACACTTGCCGTAACAACCTGCAAACGAGAGTAACCAAGCTTTTTAGTAAAGCATTGCAAGCAGAAAAGATTCCATTATCGACCCAATATGGCGCTCTTGTTGGGCTTGGAGAGCAAGGACAAGAGGTTGTGAAGGCATTTATTGTTCCCCATTTAAAAATTCTTGGAGATCGTCTGAAGGCAGTTATAGACAGTCCAGTTGTAAACAGTTTAGATAAACTTGCTGTTGATCATGTCAAAAAGATTTTATTGAAAGTTGTCCCCCCGGTACTGAAAAATATGAAAACTGGAAATGACACAAATGAAGATTTTATAAAAGAATATGGTTACTTAGGCCAGCCACTGCATGCTGCTGTTCTTCAAGAAAGACAGATTCCTATATCTGTACCCAGCTTGCCACCTGTCGCTATTACAACTGCAAGTGGGAGACAACCCATCCTTATCCAATCTGGCAGCTCAACACAAACGAGTATGTCTACAATTAGCACCAACACACGCTTGGTTACCCCTTCAAGTGGTGGAGTGACACGTACACAAACCCCAGGGCAAAACAAGTTGGTCATCGTTACTCCACAGTGCAGACCCACTGTAGCAGGATCTGCAACTACTGGTTTCAGCAGCACTGGTAGCAATACTTCTGCTCCAACCATTGTCAAACTGGTAACTGCTCCCAGTACTAGCACCACCAGTAGTGTTGTCGGAGCACCTCCCCAGAAGATTGTCATGGTGTCCCTCCCTTCAGGGGCTAGCGCCACCACACAGGTGTGTACCTCAGTAATGCAGACTAGCAGCACAAGTACAACTGCGCCAATATCTACTGCTTCTCATGGGAGCAAATGTGCATGTGCAGTGCTACAAATGCAGATGTGCAATGCAGTTGCACATTGGTACAAATGCAGCTGTGTAGTGCTACAAATGCAGCTGCTCAGTGCTACAATGTGGTTGCACAGTGCTACAAATGCAGCTGTGCAATGCGGTTGCACATTGGTACAAATGCAGCTGTGTAATGCTACAAATGCAGCTGCACAGTGCTACACTGTGGTTGCACAGTGCTACAAATGCAGCTGCTACAATGCGGATGCTCAGTCTTCTCAGAGATCATCTGAAGAAAAGACAGGATTCGATGATGCCAGCGATGCATGTGGTGAAATTGAATGCAACTATGATGAAGTGGTGGAGACCTTCGACGACATGGATTTACGTGAGAACTTATTACGAGGAATCTACGCCTATGGTTTTGAGAAACCATCCCTCATCCAACAGAGAGCTATCGTTCCTTGTTTAAAAGGTAATGATGTGATTGCCCAAGCCCAATCCGGAACGGGTAAAACAGCCACCTTCTCCATTGCCATCCTGCAGCGGGTAGATGTAGAACTAATGGAATGTCAGGCCTTGGTTTTAGCACCCACCAGAGAATTGGCTCAGCAGATACAAAAGGTAGTTTTAGCTCTGGGCGATTATCTGCAAGCTCAATGTCATGCATGTATAGGAGGAACTAATGTAAGAGACGATAAACTGCGTCTCTCTCAAGGAGTACACACTATTGTCGGAACTCCAGGACGTGTACATGATATGATCAACAGAGGATATTTGAAAACAAATCATATCAGGATATTTGTTCTTGATGAAGCAGATGAGATGCTTTCACGTGGATTCAAGGATCAAATTTACAATGTATTTAGGTGCATGCCAGAAGCTATTCAGGTTATACTTTTGTCAGCCACGATGCCTAAGGATGTATTTGAGGTGACTACGCACTTTATGAGAGACCCTATCAAGATTTTAGTAAAGAAAGAAGAACTTACTCTTGAGGGTATTAAACAATTTTATATCCAAGTTGAACGAGAGGAATGGAAATTGGATACCTTATCCGATTTGTATGGCACTCTAACTATCACCCAGGCTGTTATATTCTGCAACACACGTAGGAAAGTAGACTGGCTCACAGATAAAATGCTGGAAAGAGACTTTACAGTTTCTGCTATGCATGGAGATATGGACCAAAAAGAAAGGGATGTGATTATGCGGGAATTTCGCTCTGGTTCAAGCCGTGTGCTCATCACAACCGATCTTCTGGCACGTGGGATTGATGTGCAGCAAGTGTCCCTGGTCATCAATTATGATTTGCCTACAAACAGGGAAAATTATATTCACAGGTCAGTTGCTTTCGAATCAGTCACAGAACTGCAGAACAAAATTGGCCGAGGAGGACGTTTTGGTCGTAAAGGAGTTGCCATCAACTTCATCACTCAGGAAGATGTCCGTATTGTTCAAGATATTGAACAGTTCTACAACACAACAGTCGATGAGATGCCCATGAATGTTGCAGATTTAATT

Transcript

pred2_09530.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02969	TAF	TATA box binding protein associated factor (TAF)	Domain	Interproscan
PF07571	TAF6_C	TAF6 C-terminal HEAT repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004823	Domain	TATA box binding protein associated factor (TAF), histone-like fold domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR011442	Domain	TAF6, C-terminal HEAT repeat domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037796	Family	Transcription initiation factor TFIID subunit 6	Interproscan
IPR044728	Domain	ATP-dependent RNA helicase eIF4A, DEAD-box helicase domain	Interproscan
IPR046344	Homologous_superfamily	TAF6, C-terminal HEAT repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10221	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000124	Cellular Component	SAGA complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046695	Cellular Component	SLIK (SAGA-like) complex	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-