Gene detail

Detailed information of pred2_05685.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_05685.1	COILED-COIL DOMAIN-CONTAINING PROTEIN 13	Sc3x4tf_344	1136627	1052128	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_05685.1

ATGTCTAAGAGAGGTCGTGGTGGTACAGCCGGAGGAAAATTCAAGATTTCCTTGGGTCTTCCCGTAGGCGCAGTTATCAATTGTGCTGACAATACAGGAGCCAAAAATCTTTATGTAATTGCTGTCAGTGGTATTAAGGGTCGTCTGAACAGACTTCCCGCAGCTGGATGTGGTGACATGTTGGTTGCTACAGTAAAGAAAGGAAAGCCAGAATTAAGAAAAAAAGTAATGCCAGCTGTTGTTATCCGACAGCGAAAACCATTCCGGAGGAAGGACGGTGTTTTCATATATTTTGAAGACAATGCCGGTGTTATTGTCAACAACAAAGGAGAAATGAAAGGTAAACATTATCTTCAGTTAAAGTTACTTTCTTGGTCAGCGATCACAGGACCTGTTGCAAAAGAGTGTGCAGATTTGTGGCCTCGTATTGCTTCAAATGCAAGTTCCATTGCAAGGGTCGGTCACAGCGGTTCTGGACCTGAAATGAATTTCTTCGAAGGTGGCAGAAAGGAGAAGCGCAGTAGTAGCAAAAAAATGAACCAGAAAATCCTCCTGAGTTGCTGTAACAGAAAAATGCCGAGCTCTGGGAAAATCGATAGAACACAACTTCAATCTCACGAAAAAACTCAGAAGAAACTTCAACGGAAAAAGAAGAAAGAAAAAATTAAAATGAGTCCAGTTGAATTGGAATTCTCATCAACATTTGGTGTGGAGGATGAATTAAATCTTCAGTTACCAACAGCCGTCTCACCTGCTCCAGTCAGTGTTCAGTTACCGGAAGTAATGAAGGATCAGATTCGGGGACTCAAAGATGAAAATGGGAGACTTTTTCAATTGCTAAAAGAAAAAGACTTTGAAATACGTCAGCTCCAAAAATTCAAATCTGAACACACATCTTCTCTGAGCATGCCTGGCCTTACAAATGACGCGGCAGCAGCAAAAATTGTGGAATTATCCAAGAAATTACGAGAGACTGTTGCGGAAATGGAGGGAGAGAAAACCAAGTGTAAACAACTGGCCAAAAAATGTGAGGATTTAAAATTACAGGTTGCCAATCCTAAGGATAGTCATGTAAGACTACCAGTGGAACTGAGCGAGGAACAAAAGATTGCTGAAGAATTCAAAAGTCTGCAGGAGAAATTTAAGCAAACAGAATCCAAGATGGCTGACTGGCGGAATCAGTGCCAGATTCTAAAACAGGAACTGAAATTGGCCAACAGGGTGATTTCCCAAGAAGTAGGTGAAGGTTTTAGTCTGCACAGTTTAGCATCAGGTAAAAGCACGTGGAAAGGTCGAATGCAGCAGATTCTCACATCACAGCAAAAGAAAGTAGTATTTGAACTCAAAGAACTTCAAGAAATGCATGCTTCACTCAAAAACAAATTTGAGAGTGTGAAAGCCAGAAACCAAGTTCTGTCAAATGAAGTAAAAATGCTGAAGCAACAAATTAAAACTCTGTTAGAAAAAGGACAACACGATGATGAAATGATATCAACTTTTATGACACAACTTTCTCACATGAAGGATTTTATGCAGGAAAATAACCAATTAAAGCAACAGAATGATCAGCAGATAAAGCTCAAAGAATTGTCAGTAACAAAACAGCACGATGAATACATTGTGGAACAGTTGAACCGGATCATAGCAGAAAGGGATGAAAAGATCAGAAGCCTTTCAGAAAGTCTTAAGCAATTGTCTGGTGAAACGACTCCAAAAGGAGAAATCTTTCGACTTGCACCTGTAGCAGACTCCAACACAGAGAAAAGCAATTGTGAAAATGCCATAATACAAGAATACATCTTCAACTCAAATAATTCCAGTGCAGGAGTAAACGAAGCTGATATACATGTGGAACATCCCCAGAACTTGAGTTCCATGCAGGGACAGATCACAGAAAAGTTAACAGACGAAACAAATCTGAATACTGGACAAGGATATCAATTAAAAACAGTTCAAGATCGATTGTTTGCTGCTGAAGAGAAAATCAATGTCATTCAAGAAGAACACGGCAGCCATTTAAGAAGAAACAGACTTTTAGAAAATGAAATCATTGAAGGGGAAGATGCCTTAAAGAATAAAGAAATAAAGAATCAAGATCAACATCAGGTTCATTTTGGTGTCAGAAAGAGTATTTTATCAATTGATACCAGCTTAATTGATGGAGATGAACTGCAGACCGTG

Transcript

pred2_05685.1

ATGTCTAAGAGAGGTCGTGGTGGTACAGCCGGAGGAAAATTCAAGATTTCCTTGGGTCTTCCCGTAGGCGCAGTTATCAATTGTGCTGACAATACAGGAGCCAAAAATCTTTATGTAATTGCTGTCAGTGGTATTAAGGGTCGTCTGAACAGACTTCCCGCAGCTGGATGTGGTGACATGTTGGTTGCTACAGTAAAGAAAGGAAAGCCAGAATTAAGAAAAAAAGTAATGCCAGCTGTTGTTATCCGACAGCGAAAACCATTCCGGAGGAAGGACGGTGTTTTCATATATTTTGAAGACAATGCCGGTGTTATTGTCAACAACAAAGGAGAAATGAAAGGTAAACATTATCTTCAGTTAAAGTTACTTTCTTGGTCAGCGATCACAGGACCTGTTGCAAAAGAGTGTGCAGATTTGTGGCCTCGTATTGCTTCAAATGCAAGTTCCATTGCAAGGGTCGGTCACAGCGGTTCTGGACCTGAAATGAATTTCTTCGAAGGTGgcagaaaggagaagcgcagtagtagcaaaaaaatgaaccagaaaaTCCTCCTGAGTTGCTGTAACAGAAAAATGCCGAGCTCTGGGAAAATCGATAGAACACAACTTCAATCTCACGAAAAAACTCAGAAGAAACTTCAACGGAAAAAGAAGAAAGAAAAAATTAAAATGAGTCCAGTTGAATTGGAATTCTCATCAACATTTGGTGTGGAGGATGAATTAAATCTTCAGTTACCAACAGCCGTCTCACCTGCTCCAGTCAGTGTTCAGTTACCGGAAGTAATGAAGGATCAGATTCGGGGACTCAAAGATGAAAATGGGAGACTTTTTCAATTGCTAAAAGAAAAAGACTTTGAAATACGTCAGCTCCAAAAATTCAAATCTGAACACACATCTTCTCTGAGCATGCCTGGCCTTACAAATGACGCGGCAGCAGCAAAAATTGTGGAATTATCCAAGAAATTACGAGAGACTGTTGCGGAAATGGAGGGAGAGAAAACCAAGTGTAAACAACTGGCCAAAAAATGTGAGGATTTAAAATTACAGGTTGCCAATCCTAAGGATAGTCATGTAAGACTACCAGTGGAACTGAGCGAGGAACAAAAGATTGCTGAAGAATTCAAAAGTCTGCAGGAGAAATTTAAGCAAACAGAATCCAAGATGGCTGACTGGCGGAATCAGTGCCAGATTCTAAAACAGGAACTGAAATTGGCCAACAGGGTGATTTCCCAAGAAGTAGGTGAAGGTTTTAGTCTGCACAGTTTAGCATCAGGTAAAAGCACGTGGAAAGGTCGAATGCAGCAGATTCTCACATCACAGCAAAAGAAAGTAGTATTTGAACTCAAAGAACTTCAAGAAATGCATGCTTCACTCAAAAACAAATTTGAGAGTGTGAAAGCCAGAAACCAAGTTCTGTCAAATGAAGTAAAAATGCTGAAGCAACAAATTAAAACTCTGTTAGAAAAAGGACAACACGATGATGAAATGATATCAACTTTTATGACACAACTTTCTCACATGAAGGATTTTATGCAGGAAAATAACCAATTAAAGCAACAGAATGATCAGCAGATAAAGCTCAAAGAATTGTCAGTAACAAAACAGCACGATGAATACATTGTGGAACAGTTGAACCGGATCATAGCAGAAAGGGATGAAAAGATCAGAAGCCTTTCAGAAAGTCTTAAGCAATTGTCTGGTGAAACGACTCCAAAAGGAGAAATCTTTCGACTTGCACCTGTAGCAGACTCCAACACAGAGAAAAGCAATTGTGAAAATGCCATAATACAAGAATACATCTTCAACTCAAATAATTCCAGTGCAGGAGTAAACGAAGCTGATATACATGTGGAACATCCCCAGAACTTGAGTTCCATGCAGGGACAGATCACAGAAAAGTTAACAGACGAAACAAATCTGAATACTGGACAAGGATATCAATTAAAAACAGTTCAAGATCGATTGTTTGCTGCTGAAGAGAAAATCAATGTCATTCAAGAAGAACACGGCAGCCATTTAAGAAGAAACAGACTTTTAGAAAATGAAATCATTGAAGGGGAAGATGCCTTAAAGAATAAAGAAATAAAGAATCAAGATCAACATCAGGTTCATTTTGGTGTCAGAAAGAGTATTTTATCAATTGATACCAGCTTAATTGATGGAGATGAACTGCAGACCGTGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00238	Ribosomal_L14	Ribosomal protein L14p/L23e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000218	Family	Large ribosomal subunit protein uL14	Interproscan
IPR019972	Conserved_site	Large ribosomal subunit protein uL14, conserved site	Interproscan
IPR036853	Homologous_superfamily	Large ribosomal subunit protein uL14 superfamily	Interproscan
IPR038929	Family	Coiled-coil domain-containing protein 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31935	COILED-COIL DOMAIN-CONTAINING PROTEIN 13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0034451	Cellular Component	centriolar satellite	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-