Gene detail

Detailed information of pred2_05440.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_05440.1	UBIQUITIN LIGASE E3 ALPHA-RELATED	Sc3x4tf_271.1	1039390	882991	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_05440.1

ATGGAGCGACTGTCCCCTTGTTCGAAGGTTGCTCACGAATTTGAACACAGAGCCATAGTGCAACCGTGGGGGACGGTGACGGTGAAGTGCTTGAGAAGAGACCCCCTCCCCTGTCGAAGAATTAGGACAACGACAACCCTGAATACTGCATGGTGTTATGTAAGTGGTAAACAAGAGTCGCAATTAAAATCTTTCTCCTTATGCCGACGACGTGGTGACCCAGTAAATGTCTTATCTGAATGGAAAAACAATTATGAGAAAGGAACTTTATTGGTCTCTTTGAAAAAACATTGGAAAAACTTTGTACCTATTGTATATGCCCCCAACCAGGAAAATAGTAAAGAAGAAAGATTATCTCAGAAGCTTATATTCAGTCCATTGGAAAGTTTTTTGTGCAATGGAGATCCTGAAACGGTGTTCAAACAGTTAAAAGAAAAAGATGTCCCATCACAGATATGCGGTCATGTTTTTAAGCATGGCGAACCAAGTTATTCATGCAGGGACTGTGCCAATGATCTCACTTGTGTACTATGTATCAACTGTTTCCAACAAAGTGTTCACAAGAAGCACCGTTATCGTATGAGTATCTCTGGTGGTGGTGGCTATTGTGATTGTGGAGATCCTGAAGCATGGAAGTCCGAACCACATTGTGAGACTCATGGAAAAGGAACGGGAATGGAAGAAGAACAGAATCGCTTGGATGCTTTACCATGTGACTTGATAGGGCGAGCCGAGGCGTTGTTTGTGGCTACTCTTCAGTATGCCGTGGACATGATGACTTGGGAACAGTGTGATACATTACCAGCTGACCTCCAACCGGACGGGGAGCTCGATGACTTGTATGTTACAATTCTTTTCAATGACGAGATACACACTTTTGATCAGGTTATTAGCACACTTCAAAAAGCTGTAGAATGCACGCAAAAACAAGCAGCAGACTTTTCTACCACAATTGATCGCGAAGGAAGGAGTGGTGTCAGAATTGGTCAATTCAGTGTATGTGATAAAACAAGGAGGACAATTGAGAAATACTCTCAACTGATGGAAGACTTTTTACAAGATGACCATGATCATGAGGTTTCAGTTGTGTCCTTATCTGTACAAATCTTTACAGTGACCAGTCTGCATTATGCTGAACTTACGCAAGACTTTATCAAAGACGATAATTTACGCTCGGTGTCCATTATGTCTGTTTCCCTTCAAATATTCACTGCTGCCACTGTGGCTCGTTACTTGATTACAGACCACAATCTCCTGGGTGTTATCTTACAAACTTTCCTCAAACAGTGTGAAAGTAAAAAGAACAAAAATGGCAAATTGTCATTCGGTCGAAGTGAAACTGGTAGTGCATTCAAGAGAGCCTGGTTTATGTTATATGACCTCAAGTATACTTTATTTTGCAAACCAAGCCCAGAAGAATGGACGGATACTCTCAGGAAAAGTTTTCGAAATGGTTTCGAAGCATTGCTTGATTTGTTAAAAAGCATGCAAGGAATGGATTCTGTAACACGTAAAGTTGGTCAGCATTTGGAAATTGAGCCCGAGTGGGAGAGTGCATTTAATCTACAACTTCGTTTGCAAGACAACATTGCACTGTTTCTTGATTGGTGTGCAAGTGATTCCACTGTGCTGATGAACAGCTACATTGCCACACTTCATGCTCTCTATCAATGCAGAGATAAACTGGATATACACAAAATGGAGCTATGTGAAGTTGCCAGTCATGCAACTGAGTGTATCAAGTATGATGTCGCCAGCCAGCCAGTCAGTATTCATTTGCCTGTGATCAGACTTCTTGCAGGACTCCATCTTCACCTGAAGTTCGACACGTTTAATCCAGAAATAATTTCACAATGTGACATGAACCCAATGGATTTGATAGAGCCACCACTACGAACCCAAGTGATGATAGCTCAGACACAGGCTGGCATGTGGCGTAGAAATGGATTTTCTCTTCTTAACCAGATCTTTTTCTACCACAACGTGAGGTGCCGTGTGGAAATGTATGACAAAGATATTTTTTTCCCTGAAATTTCAATGTTTCAATCTTTAAACAGATCGAATTATGATGACCCAGGAGGTCAAGAGGATTCTGTTAGACAGACCAGTATGCTAGCTGAAGAATTTTTAAATCTTTTGATTATTATTTTAGGTGAGCGTTATACTGTTGGTGTGGGAAAGATAACTCAGGAAGATGTTGTGAAAAGAGAAATCATTCACCAACTGTGCATTACTTCAATGGCCCACAGTGAATTGGTGAAAGCCTTACCTGAAGATGTTGGGGGCAAAGGTCATTATGAATTGAAAGCAGAACATTACAAAGAATACAACACATACTTTTACCATTACAGTCGAACAGAGCAATCGAAGGTAGCCTTGCCACCTCCCGAGCCACCTCAGTTCTGTGACGTTTTCAGCACTGTGCCTAAACTCCTCAGCTGTGATGTAATGATTCATATCATGGAACTCGTACTGACACGTACAGCTGCTCAGAGGTCCAGGTCTTGGTCAGAGGCACAATTTGAAAGGATTCTGCATTTGATCGGCCTTGCACTTCACGAGCAGAAAATAGCAATAAAGAAAGGAGAACAAATGTCTTCCCGGGGAAGTTCAAAGCCTTTGAAGGTACAAGTAATGCACACAACGGTCGTTTCTCATCAGAAGTTTGCATTAAAAATGATCCAGTGGTTACAACATATTATCTCCAAATCAGATGGTTTGCGGTATTTATTTTGTAAGTTAGCAATGCAACCAGCTGAAGGAGGATCTCTGATGGAACGGTTGATTTTGGCAGACACGAAATTGTGGAAAGAGGGTCAGAATATTTTGCACTTGCTGGAAAGCTTGGTGGATAGTGAACACTTGACTCATGAATATCAGAGTGATCTCCTTAGATGGGTGCTCACGTATTTTGCAGCTGTCCGTAAGATGGAAGATGTGTTTGCGAGTGTCTCGAGTCTTGGGAAATTGGCAAGTACGAGTGACGCCAAGAGAGAACAGGAGAAAAAGAAAAAAGCTGAATTGGCGGCCAAAAGACGAGAACGGATAATGTCTCAAATGTCAATCATGCAACGAAATTTCATCAAAGATAATCCGGTGTTGTGTGAAATGGCCACCTCGGATATGACACCAGCTGGTTCCGATATGGATATCAGCGAACAATTGTGCCCTCCTTTTCCTGTTGTTCTTGGTTGTGGCCAAACGAGTACAGGTTACATGAGTACAACCAAAGCTGTTTGTATTTTGTGTCAAGAAGATCAAGAGATATCCTACAATGGACGAGCTATGGTTCTTTCAGCCTTTGTTCAAAGGTCTTCAGTTCTGTCTCAGTCAAGAGGTAAAGAGATTACAAACAACGAAGATGAGGATCCGTTGCTTACACCTTCCGATCTTTCCTGTGGTACTTATACCAGCTCCTGTGGTCATGTCATGCATGCTGATTGTTGGCAAAGATATTTTGATGCAATAGCAGCCAAAGAACGGCGCCGGCCTTTTCGGTTCCGAAATACTTGCAGCTACAACATTGAAAAATTGGAGTTCTTGTGTCCGTTGTGCGCTGCAATTAGCAATACTGTGATCCCGATGTTACCTCCCTTGAACACATTGCGAACAAGTACTGCAGGCTGTGACATTGACCAGCAGAAGGAGGTGGACCTCAGCTTTAACGACTGGTTGGATGGTATTCAGAAGACAGTGCAGGCCAGTGTTAAGGCTGCTGTAGATAAAGAGTCTGAAGGTAATAACCCTTTCATCGCCTCTTATGAAAGTCTTTTATTTCAACCTTGCCCAATTTCTACAATCACAAAACTTATGGCAGAAAGTGTGGCGAAAAATTTCACATTACTTTGGAACTATGTCTATGATGATGCAAGTGGCTTTTCGGAAAGCATGAGGGAAATGATGAAGAAATTTGCCACGGATGTTTTTACTTTTGGTTTGGCAGTGGAACCTGATTGTGAAAACCCTTCTGTTCCGATTATGGCTTGGAACACTTGTGCCTATACAATTCAAGTAATAGAACAAAGTTTACAACATGATACAAAGCCCCTATTTGGTTCGTTGTCAAGTCGCCGTTCCGACTGCCTGAATGCATTAGTCAAGTTTGCGGCTGTGTGCGGCCAAGTGATGCCTGCAGACACTGTTAAACAACATTGTATACGGTTACTTACAGCATTAATTCCCGATGGTCTTGAAAAGAAACATGAACCTCCATGTCTCTTAGATTTAGACATGTTTCATTATTTGACCGTGCTGGTTATGTCATTACCGACCCTTTATGCTGAAGGGCAGACCTCAGTGCTTACCACATTCCCAACTGGGAGTCTCAATGACCAGCATGCATTGCAATTGGTGCTTACTGCTCACCTTGTACAAATCTTGCTCACTTATGAACCGGAGCCACAAGACATGATGGAAACGGAATATGATCCTGATGATGAAATTCTGTTGTTAATTTATCGACAACTGAGGGAGAAAGCAGGGATGAGTTTAGATATTCAGCCATGTCCCTGGTTGTTGTCGTCTCATGTCAAACAAGCCTGCCTACCTTTCTTACGTTGTGCAGCACTGATGTATCATTACGTGACTGGAGTTGCCTCTCCTACGGAACTACAAGAACTCGAAGGAAATCAGTTTGAGTTTATTTGCCGATATTTGGCTCTGCCCACAAAACTGAACGTCCTTTTTGGAAATCAAGGAGACATTATATCACAACTCATGAATAGGTGGTGCAGTCATCCTTCAATCAAGGATCGGTTCACAGCCAGTAATCAGAAGATTGTTCGCTACCCTCTCCCTTTGAACCACTTGGTGAAATTACCTGATGACTATAGTGAACTTATGAATCAAGTCTCAACATATACTTGCCCGCGGTCATTTGGTGATGAGAGCCGTGTCCCAACGATGTGCCTGATTTGCGGCCAGGTATTGTGTTCTCAGAGTTACTGCTGTCAGGTTGAAGTTGATAAGAAATTGGTCGGGGCAGCCACAGCTCATTCTCATGTCTGTGGCGCAGGCATTGGCATCTTCCTTAGGATTCGTGACTGCCAGATTTTCTTGCTGGCTGGACAGAATAAAGGTTGCTTCCAAACAGCCCCTTACCTTGACGATTATGGAGAACCTGACCAACTGCTCAAAAGAGGCAACCCCCTTCGCCTGAGTGAAGAGCGATACAAGCAGTTACATCGTCGTTGGTTCCAGCATGAAATCCCTGAAACTATTGTGCATAATCTGGAATCCAGCAACAGTCTGAGCAGTTACGAGTGGTGGAATTTA

Transcript

pred2_05440.1

ATGGAGCGACTGTCCCCTTGTTCGAAGGTTGCTCACGAATTTGAACACAGAGCCATAGTGCAACCGTGGGGGACGGTGACGGTGAAGTGCTTGAGAAGAGACCCCCTCCCCTGTCGAAGAATTAGGACAACGACAACCCTGAATACTGCATGGTGTTATGTAAGTGGTAAACAAGAGTCGCAATTAAAATCTTTCTCCTTATGCCGACGACGTGGTGACCCAGTAAATGTCTTATCTGAATGGAAAAACAATTATGAGAAAGGAACTTTATTGGTCTCTTTGAAAAAACATTGGAAAAACTTTGTACCTATTGTATATGCCCCCAACCAGGAAAATAGTAAAGAAGAAAGATTATCTCAGAAGCTTATATTCAGTCCATTGGAAAGTTTTTTGTGCAATGGAGATCCTGAAACGGTGTTCAAACAGTTAAAAGAAAAAGATGTCCCATCACAGATATGCGGTCATGTTTTTAAGCATGGCGAACCAAGTtattcatgcagGGACTGTGCCAATGATCTCACTTGTGTACTATGTATCAACTGTTTCCAACAAAGTGTTCACAAGAAGCACCGTTATCGTATGAGTATCTCTGGTGGTGGTGGCTATTGTGATTGTGGAGATCCTGAAGCATGGAAGTCCGAACCACATTGTGAGACTCATGGAAAAGGAACGGGAATGGAAGAAGAACAGAATCGCTTGGATGCTTTACCATGTGACTTGATAGGGCGAGCCGAGGCGTTGTTTGTGGCTACTCTTCAGTATGCCGTGGACATGATGACTTGGGAACAGTGTGATACATTACCAGCTGACCTCCAACCGGACGGGGAGCTCGATGACTTGTATGTTACAATTCTTTTCAATGACGAGATACACACTTTTGATCAGGTTATTAGCACACTTCAAAAAGCTGTAGAATGCACGCAAAAACAAGCAGCAGACTTTTCTACCACAATTGATCGCGAAGGAAGGAGTGGTGTCAGAATTGGTCAATTCAGTGTATGTGATAAAACAAGGAGGACAATTGAGAAATACTCTCAACTGATGGAAGACTTTTTACAAGATGACCATGATCATGAGGTTTCAGTTGTGTCCTTATCTGTACAAATCTTTACAGTGACCAGTCTGCATTATGCTGAACTTACGCAAGACTTTATCAAAGACGATAATTTACGCTCGGTGTCCATTATGTCTGTTTCCCTTCAAATATTCACTGCTGCCACTGTGGCTCGTTACTTGATTACAGACCACAATCTCCTGGGTGTTATCTTACAAACTTTCCTCAAACAGTGTGAAAGTAAAAAGAACAAAAATGGCAAATTGTCATTCGGTCGAAGTGAAACTGGTAGTGCATTCAAGAGAGCCTGGTTTATGTTATATGACCTCAAGTATACTTTATTTTGCAAACCAAGCCCAGAAGAATGGACGGATACTCTCAGGAAAAGTTTTCGAAATGGTTTCGAAGCATTGCTTGATTTGTTAAAAAGCATGCAAGGAATGGATTCTGTAACACGTAAAGTTGGTCAGCATTTGGAAATTGAGCCCGAGTGGGAGAGTGCATTTAATCTACAACTTCGTTTGCAAGACAACATTGCACTGTTTCTTGATTGGTGTGCAAGTGATTCCACTGTGCTGATGAACAGCTACATTGCCACACTTCATGCTCTCTATCAATGCAGAGATAAACTGGATATACACAAAATGGAGCTATGTGAAGTTGCCAGTCATGCAACTGAGTGTATCAAGTATGATGTCGCCAGCCAGCCAGTCAGTATTCATTTGCCTGTGATCAGACTTCTTGCAGGACTCCATCTTCACCTGAAGTTCGACACGTTTAATCCAGAAATAATTTCACAATGTGACATGAACCCAATGGATTTGATAGAGCCACCACTACGAACCCAAGTGATGATAGCTCAGACACAGGCTGGCATGTGGCGTAGAAATGGATTTTCTCTTCTTAACCAGATCTTTTTCTACCACAACGTGAGGTGCCGTGTGGAAATGTATGACAAAGATATTTTTTTCCCTGAAATTTCAATGTTTCAATCTTTAAACAGATCGAATTATGATGACCCAGGAGGTCAAGAGGATTCTGTTAGACAGACCAGTATGCTAGCTGAAGAATTTTTAAATCTTTTGATTATTATTTTAGGTGAGCGTTATACTGTTGGTGTGGGAAAGATAACTCAGGAAGATGTTGTGAAAAGAGAAATCATTCACCAACTGTGCATTACTTCAATGGCCCACAGTGAATTGGTGAAAGCCTTACCTGAAGATGTTGGGGGCAAAGGTCATTATGAATTGAAAGCAGAACATTACAAAGAATACAACACATACTTTTACCATTACAGTCGAACAGAGCAATCGAAGGTAGCCTTGCCACCTCCCGAGCCACCTCAGTTCTGTGACGTTTTCAGCACTGTGCCTAAACTCCTCAGCTGTGATGTAATGATTCATATCATGGAACTCGTACTGACACGTACAGCTGCTCAGAGGTCCAGGTCTTGGTCAGAGGCACAATTTGAAAGGATTCTGCATTTGATCGGCCTTGCACTTCACGAGCAGAAAATAGCAATAAAGAAAGGAGAACAAATGTCTTCCCGGGGAAGTTCAAAGCCTTTGAAGGTACAAGTAATGCACACAACGGTCGTTTCTCATCAGAAGTTTGCATTAAAAATGATCCAGTGGTTACAACATATTATCTCCAAATCAGATGGTTTGCGGTATTTATTTTGTAAGTTAGCAATGCAACCAGCTGAAGGAGGATCTCTGATGGAACGGTTGATTTTGGCAGACACGAAATTGTGGAAAGAGGGTCAGAATATTTTGCACTTGCTGGAAAGCTTGGTGGATAGTGAACACTTGACTCATGAATATCAGAGTGATCTCCTTAGATGGGTGCTCACGTATTTTGCAGCTGTCCGTAAGATGGAAGATGTGTTTGCGAGTGTCTCGAGTCTTGGGAAATTGGCAAGTACGAGTGACGCCAAGAGAGAACAGGAGAAAAAGAAAAAAGCTGAATTGGCGGCCAAAAGACGAGAACGGATAATGTCTCAAATGTCAATCATGCAACGAAATTTCATCAAAGATAATCCGGTGTTGTGTGAAATGGCCACCTCGGATATGACACCAGCTGGTTCCGATATGGATATCAGCGAACAATTGTGCCCTCCTTTTCCTGTTGTTCTTGGTTGTGGCCAAACGAGTACAGGTTACATGAGTACAACCAAAGCTGTTTGTATTTTGTGTCAAGAAGATCAAGAGATATCCTACAATGGACGAGCTATGGTTCTTTCAGCCTTTGTTCAAAGGTCTTCAGTTCTGTCTCAGTCAAGAGGTAAAGAGATTACAAACAACGAAGATGAGGATCCGTTGCTTACACCTTCCGATCTTTCCTGTGGTACTTATACCAGCTCCTGTGGTCATGTCATGCATGCTGATTGTTGGCAAAGATATTTTGATGCAATAGCAGCCAAAGAACGGCGCCGGCCTTTTCGGTTCCGAAATACTTGCAGCTACAACATTGAAAAATTGGAGTTCTTGTGTCCGTTGTGCGCTGCAATTAGCAATACTGTGATCCCGATGTTACCTCCCTTGAACACATTGCGAACAAGTACTGCAGGCTGTGACATTGACCAGCAGAAGGAGGTGGACCTCAGCTTTAACGACTGGTTGGATGGTATTCAGAAGACAGTGCAGGCCAGTGTTAAGGCTGCTGTAGATAAAGAGTCTGAAGGTAATAACCCTTTCATCGCCTCTTATGAAAGTCTTTTATTTCAACCTTGCCCAATTTCTACAATCACAAAACTTATGGCAGAAAGTGTGGCGAAAAATTTCACATTACTTTGGAACTATGTCTATGATGATGCAAGTGGCTTTTCGGAAAGCATGAGGGAAATGATGAAGAAATTTGCCACGGATGTTTTTACTTTTGGTTTGGCAGTGGAACCTGATTGTGAAAACCCTTCTGTTCCGATTATGGCTTGGAACACTTGTGCCTATACAATTCAAGTAATAGAACAAAGTTTACAACATGATACAAAGCCCCTATTTGGTTCGTTGTCAAGTCGCCGTTCCGACTGCCTGAATGCATTAGTCAAGTTTGCGGCTGTGTGCGGCCAAGTGATGCCTGCAGACACTGTTAAACAACATTGTATACGGTTACTTACAGCATTAATTCCCGATGGTCTTGAAAAGAAACATGAACCTCCATGTCTCTTAGATTTAGACATGTTTCATTATTTGACCGTGCTGGTTATGTCATTACCGACCCTTTATGCTGAAGGGCAGACCTCAGTGCTTACCACATTCCCAACTGGGAGTCTCAATGACCAGCATGCATTGCAATTGGTGCTTACTGCTCACCTTGTACAAATCTTGCTCACTTATGAACCGGAGCCACAAGACATGATGGAAACGGAATATGATCCTGATGATGAAATTCTGTTGTTAATTTATCGACAACTGAGGGAGAAAGCAGGGATGAGTTTAGATATTCAGCCATGTCCCTGGTTGTTGTCGTCTCATGTCAAACAAGCCTGCCTACCTTTCTTACGTTGTGCAGCACTGATGTATCATTACGTGACTGGAGTTGCCTCTCCTACGGAACTACAAGAACTCGAAGGAAATCAGTTTGAGTTTATTTGCCGATATTTGGCTCTGCCCACAAAACTGAACGTCCTTTTTGGAAATCAAGGAGACATTATATCACAACTCATGAATAGGTGGTGCAGTCATCCTTCAATCAAGGATCGGTTCACAGCCAGTAATCAGAAGATTGTTCGCTACCCTCTCCCTTTGAACCACTTGGTGAAATTACCTGATGACTATAGTGAACTTATGAATCAAGTCTCAACATATACTTGCCCGCGGTCATTTGGTGATGAGAGCCGTGTCCCAACGATGTGCCTGATTTGCGGCCAGGTATTGTGTTCTCAGAGTTACTGCTGTCAGGTTGAAGTTGATAAGAAATTGGTCGGGGCAGCCACAGCTCATTCTCATGTCTGTGGCGCAGGCATTGGCATCTTCCTTAGGATTCGTGACTGCCAGATTTTCTTGCTGGCTGGACAGAATAAAGGTTGCTTCCAAACAGCCCCTTACCTTGACGATTATGGAGAACCTGACCAACTGCTCAAAAGAGGCAACCCCCTTCGCCTGAGTGAAGAGCGATACAAGCAGTTACATCGTCGTTGGTTCCAGCATGAAATCCCTGAAACTATTGTGCATAATCTGGAATCCAGCAACAGTCTGAGCAGTTACGAGTGGTGGAATTTATGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|N-domain
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity\|UBR-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02207	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF02617	ClpS	ATP-dependent Clp protease adaptor protein ClpS	Family	Interproscan
PF18995	PRT6_C	Proteolysis_6 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126	Domain	Zinc finger, UBR-type	Interproscan
IPR003769	Domain	Adaptor protein ClpS, core	Interproscan
IPR014719	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039164	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR044046	Domain	E3 ubiquitin-protein ligase UBR-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-