Gene detail

Detailed information of pred2_04939.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_04939.1	HMG-BOX TRANSCRIPTION FACTOR BBX	Sc3x4tf_88	6748214	6713485	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_04939.1

ATGGATTTGGGGGTAAAAAGTGACTGCAGCCAGCAACCCCTCAAAATGCCCAAATGCAAACCATACGAACTGAAGTTCCGTAAGGAGTGGCTACAAGATGAATGTTTCAAGACTAAAGAGTCTGCTGATAGCCAACCTATGGAGGGTGGAGGCGACCACAGGGAAGCTCGGCGTCCTATGAATTCTTTTTTTATATTCTGCAAGCGACACAGAACTATGGTACGTGACCATCATCCAAACCTGGATAATCGAAGTATTAGCCGTATTCTTGGTGAGCTTTGGGCTAAATTGGATCCAAGAGAGAAACAGCAATATACTGCAACTGCTAAACAATATAAGGATGCATTTCTTAAGGCAAATCCAGATTATAAATGGCATAACAATGACAAGTCTCATTTGATGTCAACGAGTAACTTTGCTATGAATCAAGAATTGGCTGACCCTGACAAAAATCCTGAAAAAGTGGAATGCTGCAATGAAAGTTCTGTTGATAGCAACAATATGGATGTTCTATTTATGGCAATACAACAGAATAACAACAAAGAAGATTTTGTAAGACGAGTACCTAAGGAAAATACAAATGGTCCACACATTGGAGAGTTGTCCATATTAACTCGAAAGGATGCTCTCTCATCAACCCCTATCAAACACGAACCAGGAAATGTGAATGCAAACATAGAGTACGCGATGAAACAGGGTTGGGCCTGTGAAAATGAAGACAGCAAATTCCCTGAATATCCTGCCAAAGACACCTCGCCTCCCACATCGAGCCCCACCCACATGAGCAAAGATGGCACTGAATCCGATGGCAGCAAAAGTCATCAAAGCGATGCCAGTGGGGATGCCAGCTGGGCAAAAAGTAACAGCTTTGACAATTGCCGACAAGCTGATTACATATACCGGGAGGTTAATTTGCCGACACGTAAATCTAAAAGAGCAAACAAAGGAGCCATTTATAAGAATCTGATTGCCACTGGTGCATTACCTGCTGCCCGAGAACGATTAGCTGAGATTCAGACCATCTACAATGTTAATTCAGATGATGGGAGTGAGATTAAAGAGACTCAATGCTATGAACAGTCCATTCGAAGGTTCAAACGTACAGCTTCTGAATCGGACAACCATTCTGATAAACGTTACAAGACTGGAGACTTTGATTTGGATGCCAAAATTGCCACTCTTCCAGCCTGCTCAATGGATGTTTTAGAAAAGAATCGCAGAAATGCCACCAAGCCAAAGTCTTCTCCAGAAAATTCACGACGAGCATCAGGAGCTAACAGTACTCGAGTCGTGAAAACTGACATGCTCTTGACTCCCCCACGCCGGCAAAGACAGCCTGTTACTTCCCCCATCGTAGGTAGTCGTAAAAGGAAACAATCAAAGGGCTCAATTATGAGATTTGTTCCATTGTCTGACGAGTTCAAACATCATCTTCCAAACATCATGAAAACTCCATTGACACAATTTTATCTTCACCCCACAATGAAATCCTACCAAGATCTTTTGGTTCTCAAGCAAGCATCATCCAGTCCAGATCAGGCTACTTCCACATCTGATGACAGCTTTGAGTGCAAAGATGACAACTCTCGTGTCACTATGGAAGTAGTGCCATCTAGCAACCAAAAGGCCAAAAAGGTCATCCCCGCCGATGTTCCCGTCATCACTGCCATTTCAACTTTAACAATACCAACGATGACAAAAATTGCTGCAACTAGCAACACCAAAGTGTCCATTGAAGAAAAACCCATCCTTCCCTCTGCAGCAGTCAAAGCAGATTGTAGATCTGATGCCACAGTACCCAACCCCAAATGTTCTGTCCCTGTGACTCCATCAATGCTTAACGTTTATCAAGCTTCAGTGAGTTCAGTAGATATTTCAATGAGATCGACACAAGTGACTGATATTAGTGCACAGATGACAGCAGCAGCCCACACTCCAAATATACCATTGGCTGCTGTTGCTGCCGCCGCTGCTGTAAGTGAGCCAATGCAAGCCCCTGTGCCCCTGGATTTGGGTCCCACTTCTGGATTACATGTTTCTGGAGAATTGAAAGTAAAACTTGGAAACCAGTCGCCAAAGCAATTGAAATCGAATGAAAATCCGGATTTTAAAATCTGGATCTCCAACTTAGCAGAAGCCGCAGAAAGGGCTGGGCAAATTTCAGTCTGC

Transcript

pred2_04939.1

ATGGATTTGGGGGTAAAAAGTGACTGCAGCCAGCAACCCCTCAAAATGCCCAAATGCAAACCATACGAACTGAAGTTCCGTAAGGAGTGGCTACAAGATGAATGTTTCAAGACtaaagagTCTGCTGATAGCCAACCTATGGAGGGTGGAGGCGACCACAGGGAAGCTCGGCGTCCTATGAATTCTTTTTTTATATTCTGCAAGCGACACAGAACTATGGTACGTGACCATCATCCAAACCTGGATAATCGAAGTATTAGCCGTATTCTTGGTGAGCTTTGGGCTAAATTGGATCCAAGAGAGAAACAGCAATATACTGCAACTGCTAAACAATATAAGGATGCATTTCTTAAGGCAAATCCAGATTATAAATGGCATAACAATGACAAGTCTCATTTGATGTCAACGAGTAACTTTGCTATGAATCAAGAATTGGCTGACCCTGACAAAAATCCTGAAAAAGTGGAATGCTGCAATGAAAGTTCTGTTGATAGCAACAATATGGATGTTCTATTTATGGCAATACAACAGAATAACAACAAAGAAGATTTTGTAAGACGAGTACCTAAGGAAAATACAAATGGTCCACACATTGGAGAGTTGTCCATATTAACTCGAAAGGATGCTCTCTCATCAACCCCTATCAAACACGAACCAGGAAATGTGAATGCAAACATAGAGTACGCGATGAAACAGGGTTGGGCCTGTGAAAATGAAGACAGCAAATTCCCTGAATATCCTGCCAAAGACACCTCGCCTCCCACATCGAGCCCCACCCACATGAGCAAAGATGGCACTGAATCCGATGGCAGCAAAAGTCATCAAAGCGATGCCAGTGGGGATGCCAGCTGGGCAAAAAGTAACAGCTTTGACAATTGCCGACAAGCTGATTACATATACCGGGAGGTTAATTTGCCGACACGTAAATCTAAAAGAGCAAACAAAGGAGCCATTTATAAGAATCTGATTGCCACTGGTGCATTACCTGCTGCCCGAGAACGATTAGCTGAGATTCAGACCATCTACAATGTTAATTCAGATGATGGGAGTGAGATTAAAGAGACTCAATGCTATGAACAGTCCATTCGAAGGTTCAAACGTACAGCTTCTGAATCGGACAACCATTCTGATAAACGTTACAAGACTGGAGACTTTGATTTGGATGCCAAAATTGCCACTCTTCCAGCCTGCTCAATGGATGTTTTAGAAAAGAATCGCAGAAATGCCACCAAGCCAAAGTCTTCTCCAGAAAATTCACGACGAGCATCAGGAGCTAACAGTACTCGAGTCGTGAAAACTGACATGCTCTTGACTCCCCCACGCCGGCAAAGACAGCCTGTTACTTCCCCCATCGTAGGTAGTCGTAAAAGGAAACAATCAAAGGGCTCAATTATGAGATTTGTTCCATTGTCTGACGAGTTCAAACATCATCTTCCAAACATCATGAAAACTCCATTGACACAATTTTATCTTCACCCCACAATGAAATCCTACCAAGATCTTTTGGTTCTCAAGCAAGCATCATCCAGTCCAGATCAGGCTACTTCCACATCTGATGACAGCTTTGAGTGCAAAGATGACAACTCTCGTGTCACTATGGAAGTAGTGCCATCTAGCAACCAAAAGGCCAAAAAGGTCATCCCCGCCGATGTTCCCGTCATCACTGCCATTTCAACTTTAACAATACCAACGATGACAAAAATTGCTGCAACTAGCAACACCAAAGTGTCCATTGAAGAAAAACCCATCCTTCCCTCTGCAGCAGTCAAAGCAGATTGTAGATCTGATGCCACAGTACCCAACCCCAAATGTTCTGTCCCTGTGACTCCATCAATGCTTAACGTTTATCAAGCTTCAGTGAGTTCAGTAGATATTTCAATGAGATCGACACAAGTGACTGATATTAGTGCACAGATGACAGCAGCAGCCCACACTCCAAATATACCATTGGCTGCTGTTGCTGCCGCCGCTGCTGTAAGTGAGCCAATGCAAGCCCCTGTGCCCCTGGATTTGGGTCCCACTTCTGGATTACATGTTTCTGGAGAATTGAAAGTAAAACTTGGAAACCAGTCGCCAAAGCAATTGAAATCGAATGAAAATCCGGATTTTAAAATCTGGATCTCCAACTTAGCAGAAGCCGCAGAAAGGGCTGGGCAAATTTCAGTCTGCTAG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR049523	Domain	HMG box transcription factor BBX, HMG-box domain	Interproscan
IPR052412	Family	Cell Cycle and Developmental Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13059	HMG-BOX TRANSCRIPTION FACTOR BBX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-