Gene detail

Detailed information of pred2_04105.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_04105.1	FLAP ENDONUCLEASE FAMILY MEMBER	Sc3x4tf_229	375222	352938	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_04105.1

ATGGGTGTCATATCACTGTGGCCGCTCCTGGAGCCCGTCCGTCAGACGAAGTCTCTCCCAGAACTGAAGGGCCAGACAATCGCCATTGATCTCAGTGCATGGATAATGGGCTGCAAAAGAGCATCTAGACGCCGAAATGTCTACTTGAGAACTATATTTTATCGTACCCTTGATCTTCTCAAATGTGGCATAAGGCCAGTTTTTGTGTGTGATGGTTGCATCCCCAAAATAAAATTTGACAAAATCCGAAGCCGATACAAAGGTCGATCATTTGGAAAATCAGGACCCATCTTTCGAGACCGATCACAGAGTGACTCCACGCGAATCTGTCGTCACCTGTTTGAATGTCTGGGTCTTCCCTTCCTGGAGAGTGAAGGAGAAGGCGAGGCCCTTTGTGCTTTTCTCAACAACAAGCAGATTGTGGATGGTTGTTTGACCTCCGACAGTGATGTCCTGCTCTACGGAGCAAGAAAAGTCTACCGGAACTATACCAAGAGGAATAAGGTTGGGTATCTGGAGGTTTACGAGGCCAAAGACATCCGGGATCAGATGCAGCTTGACCAGAGGGCTCTTGTGGGTCTGGCTTTGTTACTGGGCTGTGATTATAATCAAGCGGGGGTACCAGGAGTTGGGATCAAAACCGCTGTTAGAATGATGAGGGAGATGCAGAAAACAAACAATGACACGCTACAAAGAATGCTGTCTTGGAGGACCAATCAGGAATTACAAGATCTTCAAGAACAAATGGACATCTTTAATGAAGAGAAACATTGCAACGAATGTCTCCACATTGTTGTGGGTCACAGTCAGAGTGGGTGTGACCTTTGTGGGGACAACATCAATGTATCGGAAGACCTGGAAGGCTGTGATTGTTCTTGTCACTCTTTCCTGCAGAAATTTGTTTCCCATGAAGAAGAATTGAAAGTCCGACAGAAAGCCATGCTTGATCCAAATTTCCCATCACAAGAGCTCATTGAAGAATTCCTGATTCCAACTGAAAGCAGAAATTCCCAAACTGACATCAATTGGCAGGAACCAAACTTTGGTGACTTGCAGGCTTTTGTCTCTAATCATCTTCACTGGAATGGACATGTTTTATTTAAGAAATTGGTTCCTCTAATCATTCAATGGAAACTGAATTCATCAACCTTTCACTGCCTTGAAGGTGAGGATATTTGGACTAAAGATTCTACATATAGATGCAGTGTAGATAGGGATTTGTTTCAAAAATGCTTTCCTAAAATGGTGGAATCCTTTGAACAATCCTTGCTGCCAGCAAAAATTGTCGAAGTAAACATGAAGCCGACCATTTCAAATCCTTCCGCCCGAGTAACACGGAGCGCCTTAAAGAAGCAAGGTCTGACTTTGTCTGACATTGAAGATAAACGCCAAAGTCTGGACAATTCTGACGATGAAACCGGAACTGATCAATGTGAGACGTCTGAAAGGCAATCCAAGGGAATAATTGAGAAACAAATAGGAAACCCTCCAGATCAAGTTACGTGTTCATCTGTAGAGTCAACCAATTCTCTTGGTTTGAAACGGAAGACAGAATCTCTTGACCAACAGACCGATTCCATTCCAAAGTCTTTTGCAGGAGTAAAGAAACTGAAGAAATTAATGTTAAAGGTCAAGTCCGTCGACTCCGCAGACACACAAAATGAAAAGGATATTTCTGCTCAGATGTCATCGTCGTCCAGCAAATACTTTAATCTAATTGGTGTCTGTAAAGTGACCTTAGAGAGAATTCCAAGTGTCAATCGTATAAAAGCAGCCGCACAAAGTCCTTCTGTCAATAAAGAACTGGGCCAAGATGGCCAAAGCAGTTTAAGTGTTGATTCCGAAGAAATGGAATGCATTGAAGGAATCAAGAGAAGATCAAATGAGGAAATAGAAAATCCTCTAAATGGGAGGGATAGGAAAACGGAGACTTCAAATAATATTCAAGAATGTTTTCACGAGGAGGGTATAGTGGATGTGAATTCAAATAGCATGGATTCCATAATGGAGGGATCAGAAATCAAGGATATGAAGATGGGATCAAAAATCAAGGATATGAAGATGGAAGGTGCAAATGGCATGGACTCCATTGTGGAAGGTTCAAATGGTATGGAATCCATTGTGGAGGGTTCAAATGTTATGGAATCCATTGTGGAGAATTCAAATGGTATGGAATCTATTGTGGAGAGTTTAAATGGTACGGATTCCGTTGTGGAGAGTTTAAATGGTATGGAATCCATTGTGGAGAGTTTAAATGGTACGGAATCCGTTGTGGAGGGTTCAAATGGTACGGAATCCGTTGTGGAGGGTTCAAATGATATGGAATCCGTTGTGGAGGGTTCAAAAAGCACAGATGTGACAAAGGGAGGTTCAAATATCATGGATTCCATAGTGGAACGTTCAAACAGCAAGAATGTGATGATGCAAGGTTCAACTGCTGTGGATAACATGGTGTGGAGTTCAAATAATATGGATAGCATGGAGTGTTTGAATGGTATGACTACCATAGTCAAAGATTCAAACAATGTAGATGCTATTATTGAAGGTTCAGATATCATCAGTAACACAGAAAATGATACCAATTCAATATTGGAGTGTTCAAATGATATTGATACCATAGGGGCGGTTTCAGATGGTATCAATACAGAAGTGAATACCTTGAATTGT

Transcript

pred2_04105.1

ATGGGTGTCATATCACTGTGGCCGCTCCTGGAGCCCGTCCGTCAGACGAAGTCTCTCCCAGAACTGAAGGGCCAGACAATCGCCATTGATCTCAGTGCATGGATAATGGGCTGCAAAAGAGCATCTAGACGCCGAAATGTCTACTTGAGAACTATATTTTATCGTACCCTTGATCTTCTCAAATGTGGCATAAGGCCAGTTTTTGTGTGTGATGGTTGCATCCCCAAAATAAAATTTGACAAAATCCGAAGCCGATACAAAGGTCGATCATTTGGAAAATCAGGACCCATCTTTCGAGACCGATCACAGAGTGACTCCACGCGAATCTGTCGTCACCTGTTTGAATGTCTGGGTCTTCCCTTCCTGGAGAGTGAAGGAGAAGGCGAGGCCCTTTGTGCTTTTCTCAACAACAAGCAGATTGTGGATGGTTGTTTGACCTCCGACAGTGATGTCCTGCTCTACGGAGCAAGAAAAGTCTACCGGAACTATACCAAGAGGAATAAGGTTGGGTATCTGGAGGTTTACGAGGCCAAAGACATCCGGGATCAGATGCAGCTTGACCAGAGGGCTCTTGTGGGTCTGGCTTTGTTACTGGGCTGTGATTATAATCAAGCGGGGGTACCAGGAGTTGGGATCAAAACCGCTGTTAGAATGATGAGGGAGATGCAGAAAACAAACAATGACACGCTACAAAGAATGCTGTCTTGGAGGACCAATCAGGAATTACAAGATCTTCAAGAACAAATGGACATCTTTAATGAAGAGAAACATTGCAACGAATGTCTCCACATTGTTGTGGGTCACAGTCAGAGTGGGTGTGACCTTTGTGGGGACAACATCAATGTATCGGAAGACCTGGAAGGCTGTGATTGTTCTTGTCACTCTTTCCTGCAGAAATTTGTTTCCCATGAAGAAGAATTGAAAGTCCGACAGAAAGCCATGCTTGATCCAAATTTCCCATCACAAGAGCTCATTGAAGAATTCCTGATTCCAACTGAAAGCAGAAATTCCCAAACTGACATCAATTGGCAGGAACCAAACTTTGGTGACTTGCAGGCTTTTGTCTCTAATCATCTTCACTGGAATGGACATGTTTTATTTAAGAAATTGGTTCCTCTAATCATTCAATGGAAACTGAATTCATCAACCTTTCACTGCCTTGAAGGTGAGGATATTTGGACTAAAGATTCTACATATAGATGCAGTGTAGATAGGGATTTGTTTCAAAAATGCTTTCCTAAAATGGTGGAATCCTTTGAACAATCCTTGCTGCCAGCAAAAATTGTCGAAGTAAACATGAAGCCGACCATTTCAAATCCTTCCGCCCGAGTAACACGGAGCGCCTTAAAGAAGCAAGGTCTGACTTTGTCTGACATTGAAGATAAACGCCAAAGTCTGGACAATTCTGACGATGAAACCGGAACTGATCAATGTGAGACGTCTGAAAGGCAATCCAAGGGAATAATTGAGAAACAAATAGGAAACCCTCCAGATCAAGTTACGTGTTCATCTGTAGAGTCAACCAATTCTCTTGGTTTGAAACGGAAGACAGAATCTCTTGACCAACAGACCGATTCCATTCCAAAGTCTTTTGCAGGAGTAAAGAAACTGAAGAAATTAATGTTAAAGGTCAAGTCCGTCGACTCCGCAGACACACAAAATGAAAAGGATATTTCTGCTCAGATGTCATCGTCGTCCAGCAAATACTTTAATCTAATTGGTGTCTGTAAAGTGACCTTAGAGAGAATTCCAAGTGTCAATCGTATAAAAGCAGCCGCACAAAGTCCTTCTGTCAATAAAGAACTGGGCCAAGATGGCCAAAGCAGTTTAAGTGTTGATTCCGAAGAAATGGAATGCATTGAAGGAATCAAGAGAAGATCAAATGAGGAAATAGAAAATCCTCTAAATGGGAGGGATAGGAAAACGGAGACTTCAAATAATATTCAAGAATGTTTTCACGAGGAGGGTATAGTGGATGTGAATTCAAATAGCATGGATTCCATAATGGAGGGATCAGAAATCAAGGATATGAAGATGGGATCAAAAATCAAGGATATGAAGATGGAAGGTGCAAATGGCATGGACTCCATTGTGGAAGGTTCAAATGGTATGGAATCCATTGTGGAgggttcaaatgttatggaatccattgtggagaattcaaatggtatggaatctattgtggagagtttaaatggtacggattccgttgtggagagtttaaatggtatggaatccattgtggagagtttaaatggtacggaatccgttgtggAGGGTTCAAATGGTACGGAATCCGTTGTGGAGGGTTCAAATGATATGGAATCCGTTGTGGAGGGTTCAAAAAGCACAGATGTGACAAAGGGAGGTTCAAATATCATGGATTCCATAGTGGAACGTTCAAACAGCAAGAATGTGATGATGCAAGGTTCAACTGCTGTGGATAACATGGTGTGGAGTTCAAATAATATGGATAGCATGGAGTGTTTGAATGGTATGACTACCATAGTCAAAGATTCAAACAATGTAGATGCTATTATTGAAGGTTCAGATATCATCAGTAACACAGAAAATGATACCAATTCAATATTGGAGTGTTCAAATGATATTGATACCATAGGGGCGGTTTCAGATGGTATCAATACAGAAGTGAATACCTTGAATTGTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-