Gene detail

Detailed information of pred2_04066.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_04066.1	TOLL-LIKE RECEPTOR	Sc3x4tf_204	8502753	8500670	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_04066.1

ATGACTCGATTCCGTTTTCAATCATTTGAAATCCTTTTTCTGCTGTTTTTACTACCAATAAACGGGCCGTTCTCTTCTGGAGTAGACCACAACCCGTGCGTAAAACGTGACAAAGTATGGGAGTGTACAAACCTCCATTACATCCCGGCTTTACCCTCAGACACTACTAATTTACAGCTGGTGAACTTTGACGTCCCTGTTCTGAGTCGGAAATCCTTATCGAATCTAACAGGACTACCACTGAAGGTGTTAGTGTTCAAGCAACTCGTGTGCGAAAACATAACAGCAGATGTATTCACGGACATGATACACTTGCGTACATTGGTAATTAAGATAATGGTACCGACTGTACAAAGTTTACGCAGGTTGTTTCTTAGCTTGCAATTCACGAATATAACTGTGATGCGTTTGTACATGGTTAAACTAAAGATGATTCACCTCGATCTTTTCGACGGGTTGCGAAACACAAGTCTGCACAAACTCCATGTGTGCAAGTGTAAATTAAAGACCTTCAATGGTAGCAGCCTCTCGCACTTAACAAAATTACACACGTTGGATTTGTCTTTAAACAGGAAATTGAAGATTAAGGCTTGGGGGCGTCTTCCGGCATTGAAGCATTTGAATCTCATTAAAACGTACATTAAGCAATTACCCAAATTCCAAGATGAATCCCTCCACGCCCAATTCGCTTATCCCGAGCTCCGAACACTAAACCTCTCACTGTCCAGCGATCATAGTCTAAACCAACATACGTTTAAGGGACTTTCGAAGCTGACCGAGTTAAAAATTGAAGCCACGGAGGAGCTTTTGATGACTTCTGGAACTATTGGAAGTGTTTTACCGCAGTTAGAGAGTTTAACGATAACTGGAACGCCGGCAGTCAACTTGGAACTATATGATAAAGCTATCAATAGCTCCTCTCTGCGAAGCCTCGAACTAAAAAATGTTTCTTTAAAGTCTTTCAATGAACCTATCTATTGTCATAATCTAACCGATCTCACACTGTCCTGTTTTAAAGCTAACAATCTGATTCGTATCCTGTCGACCTTACAACAATTGAGGCATTTAGAAGTTTCGCAATCACAACTCAAAAGAGTTCCTGCTTCAATTTGTAATCTAACTAGACTAAAGAGACTAAATCTGAGTGGAAACGCCATATATTCCTGGAGAAATAAAAACTGTGGTCTGGTTATGGGAAATTTGAGAGAATTCTCCCTGGCCAACAATAACATTAAGAAGTTAAATGATACTTCGTTTTCTGAAGCTTTGTTGAACAATTCACAATTAATGTGGGATCTTTCCTGCAACAATTACTATTGTACCTGTGGTTTGCTATGGTTTCGTGATTGGCTAAAGAAAATAGAACGGAGAATCATTGGTTATCCAAAACGCTACCGCTGTAAATTGAAGTCAGGTTTGAAGATCAAAATCGCAAATTACATAATCACATTGGATTACTGCAGGAACATATTCCGCGCGTCCCCTCTTATTGTTTTGGGAGTCTGCTTGGGTTCTTTATCACTTGTCATTATTATTTGCAGCGTCGTTGCTTATGTGAAACGCTGGTCAGTTCGTTATTGGTGCTACTTGCTATGGAGATGGCACCGTAAATATACAGCCCTGGAAGACAATATCGATTATATCTACGATGCGTTCGTCTGTTACAGCAGCAACGATATAAACTGGGTGCTCAACAAACTCGTACCTGTGATAGAAGAGACGAAACGCTACCAACTTTGTCTACACGACCGTGATTTTAAGGTCGGCTTAGACATTGTAGATAACATAGTGGAGAGCGTGCAGACAAGCCGTAAGGTGGTTTTGGTTTTATCGCCGGAGTTTGCCAGAAGCAGTTGGTGTAAGTACGAGGCCAGTGTGGCGGAGCAGCGTCTTTTGGAAGAGAACAGGGGCATACTGATACCAGTTCTTCTAGAAGAGATTCCAGATCATATCCAATCGAAAAGGCTGGCTACTCTTCTCAAGAGGAAAACCTATCTAGAATGGACGAACGACGAACGCGGTGAAGAAGTGTTCTGGAATAGATTTGCTGATATTTTAGGAGCACCGTTGGTGTACGAGGAGATA

Transcript

pred2_04066.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01582	TIR	TIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR017241	Family	Toll-like receptor	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001530	Molecular Function	lipopolysaccharide binding	Interproscan
GO:0001875	Molecular Function	lipopolysaccharide immune receptor activity	Interproscan
GO:0002224	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032497	Biological Process	detection of lipopolysaccharide	Interproscan
GO:0034142	Biological Process	toll-like receptor 4 signaling pathway	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0050829	Biological Process	defense response to Gram-negative bacterium	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-