| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| pred2_02774.1 | 3'-5' EXORIBONUCLEASE CSL4-RELATED | Sc3x4tf_186 | 372510 | 399281 | + |
| CDS | |||||
| pred2_02774.1 | |||||
| Transcript |
| pred2_02774.1 |
| Protein |
| pred2_02774.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10447 | EXOSC1 | Exosome component EXOSC1/CSL4 | Domain | Interproscan |
| PF14382 | ECR1_N | Exosome complex exonuclease RRP4 N-terminal region | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR019495 | Domain | Exosome complex component CSL4, C-terminal | Interproscan |
| IPR025721 | Domain | Exosome complex component, N-terminal domain | Interproscan |
| IPR039771 | Family | Exosome complex component Csl4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12686 | 3'-5' EXORIBONUCLEASE CSL4-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000176 | Cellular Component | nuclear exosome (RNase complex) | Interproscan |
| GO:0000178 | Cellular Component | exosome (RNase complex) | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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