Gene detail

Detailed information of pred2_00171.1 in Architeuthis dux Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
pred2_00171.1	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	Sc3x4tf_1433	906608	871582	-

Gene Structure

More details in Jbrowse Sequence

CDS

pred2_00171.1

ATGATGCAAGATGCAAACCAGGATGAGGGAATGGCCTTAACATTCCATGAATATATCATACCTGGCTTAGATAAACTTGGTTACACCTATGAAGAAGGATTTCAAATGCTTAAGGTTCTAAGCCTATCATCTATTTTGTTGGCTCCTCGAAATATGTTGGCAGACCTGGCTGGTGATTGGTTGGGGTTAGTTGTTCAGACCAAAGAATGGGAGGTCATTGACGCCGTCCTTGAAGAAATGATTGCCCAGAAAATCAGTGTAAACAGCCAGTTTTACCGCATGGTGAACCATGTGAATATTCCCGAGGCTGTTCAACAGCTTCCAATTGCTGAAATGACAACTGCTGAATTGACAGACTTGGTTCAGAAGACAGGCAACAAAACGGCCAGAAAGTGGCTGCTTATTCGTCATTGTGCCAGTGGGAATGTTGAGGAAGCCGAAAGCCTTAAGGCCTCGTTAGATGCTGAAGGTTTTCTTTATCCACCAATTGTTTTGCGTCAGCTATTCTTTCTGAATGCGATGCACAAAAAAGATGAACAAGGAGCCTTGGAATATCTCCATCAACTTCAAAGTCAATATCCGGACTATGGAGATTATGCCCGAGCTATTTTAAATATGGCAGCTGTATTTACCGAAAACGGGAAAGTGACTGATGCAATTGATGTGGTAAAAGCTTATTCCGAAACTCATGATGATTACATGAAGGATCAAAAATACGACACATCTTACAATTTGGAAGGTGATTGTTTGTTATTTATTCAAGCTGTTGTAAAGAAAGAAGAACCAGCAATCGCCAAACAAGTTCTACAGTTGATATTCAATCTTGGATACATAAAACCAGCGACGTTTGAACTGATCGAAGGAGTGATGAAAGGATATATTGACAGGAATGAACCAGATTATTGCATAGAGCTGTTAGACTGGATGATCACAGAATATAAACGAGCTCCCTGCATCAATGGATTATTGCAGATGTTCATTAAAGCTGAAGACCCCGATAAATTGCAGAAAGTAATGGACCTTGTCGTTCCTATTCATGGTGAAATGAATATACTTCACCAGTTGATGATCAGTTTAGTAGAATGTGGACATTTGAAGAAAGCCAGAAAAATTTTAGAGACTCCTGGAATGCGGGCTGCAATGATTCGTTTGAAAATCGGATGTGAAAGTTTTGTCAACAACGACAAGATTACCGAATTGGAGCAATTGGTCGAGATTACAAAAGGCATGTTTGCATTGGATCGAGATGAAATGCTGTTTCAATTGATTCGAGGCTATGTAAGAATTGGTGATTTCAAAAAAGCTCAGGATGTGTTAATCCAGTACGAGGAAGAAGGATTATCACCATCCGGTCGGACATTACGTTATTTAGCCAAAGCCATGAAAGGAGCCGGATTGGAAATCTCATTTGATGTACCGACCATTTACAATGAAAGACTCGAAGACTCCATGGGGGCCGAACATGAAATTTTACGCCATGTACAAGAAAATAGAATTCGAACGGCCAAAGATATGATAAGGAGGATGGAAGCAAGAGGCAAATGTCCTGCCGATTTGCTGCTCAAAATTGCTGAGTTCTTGTGTAAAGTGAACAAACCGAACGATGTTGGCTGGGTGATGCAGTTGTTGGCGGACCATGGAGATGTTGAGAATTTGCTGCTTCTCAAGGCTAAAAATGTTGTTGCAAACACAGATATTTTGAACAAATGTGTCTTTACCGCATATGTCACCAGTAACCGAACAGAAGAATTGATTTCTCACCTGAATGAAAATCTGAATTCCGTCGGAAGTTTTATTTCTGTTCGAGGTTTAACAGCAATTGCAAATTCACAACCAGAACAACTTCTGCACTTTGAGGAATTATCTGAAAAATGTTCCTTGCAAAACCAACGTTCAATTCTTTGGCCTTTATGGCAAACATATTTCTTCATGAATCCCCAGTGTCCAAAAGCATCTGCCATTTTACAGAAACAGCCTGAACTGCTCACTCAAATGAGCGTCCTTGGTTTGTGTCAAAAATCAGTACGAGACAATAAGATGGAGGTGTTGAAAGAGATGGAACCCTTATTCAATCAAAAGAAACAAACTGTTGCATTCATCAAAAGTCACATCATCCAGCTTCATGCCAAAAACGGCAATGTTGAAGATGTCCTTTCTGAAATAGAAAAACTGAAAGACGTTGACCTTGACGAGACTTTCTTAAGAAGAGAGGCTGTGAGAGATGTCGAGAAATTGATGACTTCAAATAATAAACCAATTCCTTGGAAGAACAAAGCAGCTGCTGATTCTTCTTCTTCCTCGTCATCGGACAGTTCGTCAGATGAAGAGACAGCAACCACCAAAGTCGACACTCGG

Transcript

pred2_00171.1

ATGATGCAAGATGCAAACCAGGATGAGGGAATGGCCTTAACATTCCATGAATATATCATACCTGGCTTAGATAAACTTGGTTACACCTATGAAGAAGGATTTCAAATGCTTAAGGTTCTAAGCCTATCATCTATTTTGTTGGCTCCTCGAAATATGTTGGCAGACCTGGCTGGTGATTGGTTGGGGTTAGTTGTTCAGACCAAAGAATGGGAGGTCATTGACGCCGTCCTTGAAGAAATGATTGCCCAGAAAATCAGTGTAAACAGCCAGTTTTACCGCATGGTGAACCATGTGAATATTCCCGAGGCTGTTCAACAGCTTCCAATTGCTGAAATGACAACTGCTGAATTGACAGACTTGGTTCAGAAGACAGGCAACAAAACGGCCAGAAAGTGGCTGCTTATTCGTCATTGTGCCAGTGGGAATGTTGAGGAAGCCGAAAGCCTTAAGGCCTCGTTAGATGCTGAAGGTTTTCTTTATCCACCAATTGTTTTGCGTCAGCTATTCTTTCTGAATGCGATGCACAAAAAAGATGAACAAGGAGCCTTGGAATATCTCCATCAACTTCAAAGTCAATATCCGGACTATGGAGATTATGCCCGAGCTATTTTAAATATGGCAGCTGTATTTACCGAAAACGGGAAAGTGACTGATGCAATTGATGTGGTAAAAGCTTATTCCGAAACTCATGATGATTACATGAAGGATCAAAAATACGACACATCTTACAATTTGGAAGGTGATTGTTTGTTATTTATTCAAGCTGTTGTAAAGAAAGAAGAACCAGCAATCGCCAAACAAGTTCTACAGTTGATATTCAATCTTGGATACATAAAACCAGCGACGTTTGAACTGATCGAAGGAGTGATGAAAGGATATATTGACAGGAATGAACCAGATTATTGCATAGAGCTGTTAGACTGGATGATCACAGAATATAAACGAGCTCCCTGCATCAATGGATTATTGCAGATGTTCATTAAAGCTGAAGACCCCGATAAATTGCAGAAAGTAATGGACCTTGTCGTTCCTATTCATGGTGAAATGAATATACTTCACCAGTTGATGATCAGTTTAGTAGAATGTGGACATTTGAAGAAAGCCAGAAAAATTTTAGAGACTCCTGGAATGCGGGCTGCAATGATTCGTTTGAAAATCGGATGTGAAAGTTTTGTCAACAACGACAAGATTACCGAATTGGAGCAATTGGTCGAGATTACAAAAGGCATGTTTGCATTGGATCGAGATGAAATGCTGTTTCAATTGATTCGAGGCTATGTAAGAATTGGTGATTTCAAAAAAGCTCAGGATGTGTTAATCCAGTACGAGGAAGAAGGATTATCACCATCCGGTCGGACATTACGTTATTTAGCCAAAGCCATGAAAGGAGCCGGATTGGAAATCTCATTTGATGTACCGACCATTTACAATGAAAGACTCGAAGACTCCATGGGGGCCGAACATGAAATTTTACGCCATGTACAAGAAAATAGAATTCGAACGGCCAAAGATATGATAAGGAGGATGGAAGCAAGAGGCAAATGTCCTGCCGATTTGCTGCTCAAAATTGCTGAGTTCTTGTGTAAAGTGAACAAACCGAACGATGTTGGCTGGGTGATGCAGTTGTTGGCGGACCATGGAGATGTTGAGAATTTGCTGCTTCTCAAGGCTAAAAATGTTGTTGCAAACACAGATATTTtgaacaaatgTGTCTTTACCGCATATGTCACCAGTAACCGAACAGAAGAATTGATTTCTCACCTGAATGAAAATCTGAATTCCGTCGGAAGTTTTATTTCTGTTCGAGGTTTAACAGCAATTGCAAATTCACAACCAGAACAACTTCTGCACTTTGAGGAATTATCTGAAAAATGTTCCTTGCAAAACCAACGTTCAATTCTTTGGCCTTTATGGCAAACATATTTCTTCATGAATCCCCAGTGTCCAAAAGCATCTGCCATTTTACAGAAACAGCCTGAACTGCTCACTCAAATGAGCGTCCTTGGTTTGTGTCAAAAATCAGTACGAGACAATAAGATGGAGGTGTTGAAAGAGATGGAACCCTTATTCAATCAAAAGAAACAAACTGTTGCATTCATCAAAAGTCACATCATCCAGCTTCATGCCAAAAACGGCAATGTTGAAGATGTCCTTTCTGAAATAGAAAAACTGAAAGACGTTGACCTTGACGAGACTTTCTTAAGAAGAGAGGCTGTGAGAGATGTCGAGAAATTGATGACTTCAAATAATAAACCAATTCCTTGGAAGAACAAAGCAGCTGCTGATTCTTCTTCTTCCTCGTCATCGGACAGTTCGTCAGATGAAGAGACAGCAACCACCAAAGTCGACACTCGGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535	PPR	PPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR033490	Family	Leucine-rich PPR motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46669	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0070129	Biological Process	regulation of mitochondrial translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-